rs234071921 SNP Detail

Summary

• ID
  rs234071921
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23935654 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCGTGCTG CTGCCCAAGA
  AGACCGAGAG CCACCACAAG GCCAAGGGGA AGTAATCTGG CGATTGTCTG TACTGCCCAG
  TTGAAAGTTA ACCAAAACAA AGGCTCTTTT CAGAGCCACC CACATCTTTC CATAAAATGA
  GCTGCCACCT CGTGAAACGT TCTTCCACTA CAGTTTTTAT ACTACATATG AAAAAGTTAC
  R
  AAGTAGCTTT CAATCTTAGT AAATTGATTT TAATACTGTT AGTCCCTGCG ATAAATCTTA
  CGACCTTCCT TAGTTTGAGT CAAAAGTGTG TAAGAGATGA AACCTTTAGA ACATACTATA
  TAAATTTTTA GTAGAAATTT GGCACCCAGG TTTGTCATTC ACGTCACGAT TGTCTAGAGC
  ATAATGGTAG TAAGGGCTAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324291410	CHEV_13_23843540	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs234071921					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23935654 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5374	CpG island 5374	15 bp distal
Gm54518	predicted gene, 54518	156 bp upstream
H2ac4	H2A clustered histone 4	73 bp downstream
H3c2	H3 clustered histone 2	674 bp upstream
Rr403663	regulatory region 403663	531 bp downstream
Rr403664	regulatory region 403664	414 bp upstream
Rr475938	regulatory region 475938	535 bp distal
Rr475939	regulatory region 475939	278 bp distal
Rr475940	regulatory region 475940	41 bp distal
Rr475941	regulatory region 475941	106 bp proximal
Rr475942	regulatory region 475942	1998 bp proximal
Tssr118860	transcription start site region 118860	585 bp downstream
Tssr118861	transcription start site region 118861	553 bp downstream
Tssr118862	transcription start site region 118862	464 bp downstream
Tssr118863	transcription start site region 118863	670 bp upstream
Tssr121747	transcription start site region 121747	524 bp downstream