rs234093719 SNP Detail

Summary

• ID
  rs234093719
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:94899462 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGAGACCC CGCTTCCCAG
  GGATCATCTA AGACCATCTG AAAACATATT TACATTATGA TTCACAACTA GCAAAATTAT
  AGTTATGAAA TAGCAACAAA AATATGGTTT ATGGTTGCAG CATCAGGAAG ATTGAGGACC
  ACTGCCCTAG AGAGTGTCTA TCTGCACAGG TGGTCGGTCA CCAGAGACAT CATCTCCTCC
  R
  TGTGAACCTA CAGCCTAGCC AGACTTTCTG CAGGTTCTAC ATCTATCCAG AGGTCCGCAA
  GCTCTGGGAT GCCCTGAGAC CCACTGATGC TGTTCCTACT CACAGTTATC AGGAACTCCT
  GGCTCAACAT GCTGCTGCCC ACGGGCCCTT GGCAGTGTCC CATTCCCACA AGCCATCAGG
  AGTACTCTAT CTCTCCAGAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384337395	MGP_WTSI_11_94869950	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs234093719					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384337395	MGP_WTSI_11_94869950	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:94899462 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3571	CpG island 3571	970 bp proximal
Gm36385	predicted gene, 36385	743 bp downstream
Gm51875	predicted gene, 51875	within coordinates
Gm72634	predicted gene, 72634	within coordinates
Ppp1r9b	protein phosphatase 1, regulatory subunit 9B	1738 bp downstream
Rr454921	regulatory region 454921	877 bp distal
Rr454922	regulatory region 454922	248 bp distal
Rr454923	regulatory region 454923	686 bp proximal
Rr454924	regulatory region 454924	753 bp proximal
Rr454925	regulatory region 454925	1254 bp proximal
Rr454926	regulatory region 454926	1605 bp proximal
Samd14	sterile alpha motif domain containing 14	1243 bp upstream
Tssr104328	transcription start site region 104328	1128 bp upstream
Tssr104329	transcription start site region 104329	1216 bp upstream
Tssr104330	transcription start site region 104330	1262 bp upstream
Tssr104331	transcription start site region 104331	1300 bp upstream
Tssr104332	transcription start site region 104332	1324 bp upstream
Tssr104333	transcription start site region 104333	1330 bp upstream
Tssr104334	transcription start site region 104334	1439 bp upstream
Tssr104335	transcription start site region 104335	1464 bp upstream
Tssr104336	transcription start site region 104336	1540 bp upstream
Tssr104337	transcription start site region 104337	1608 bp upstream
Tssr104338	transcription start site region 104338	1641 bp upstream
Tssr104339	transcription start site region 104339	1661 bp upstream
Tssr104340	transcription start site region 104340	1730 bp upstream
Tssr104341	transcription start site region 104341	1748 bp upstream
Tssr104342	transcription start site region 104342	1836 bp upstream
Tssr110238	transcription start site region 110238	1657 bp downstream