rs234102403 SNP Detail

Summary

• ID
  rs234102403
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:24913679 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGACGGGAG TTGGGGCACT
  GCTATGACCT ATCTTCCTGT AGGGGGATGG GGGGGGCCTG AATCTAGAGT TTCTAGGTAG
  GGCCTGGCAC AAAGGACTGT TTCTCAGCAC CAGGGGCACA ATGCAGCTAG AGCTCCCCTC
  ACTCCTAACT GCTTCAAATA GCAAGTGCAA CCTAGGTTAG GCCACTGAGA GTGAGGGATG
  T
  TTACTTCAGT CCAGTTTTTT TTTTTTTTTT TTTGGTTTTT CGAGACAGGG TTTCTCTGTG
  TAGCCCTGGC TATCCTGGAA CTCACTTTGT AGACCAGGCT GGCCTCGAAC TCTGAAATCC
  GCCTGCCTCT GCCTCCCTTC AGTCCAGTTT TTAAAGCTGG TAACTAAGCT GAGAGATTGG
  CTTGAGCCCC ATAAGGAAGA                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss397861048	MGP_WTSI_17_24831650	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs234102403					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397861048	MGP_WTSI_17_24831650	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:24913679 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi8739	CpG island 8739			899 bp proximal
Gfer	growth factor, augmenter of liver regeneration			Intron
				Noncoding-Transcript-Variant
Noxo1	NADPH oxidase organizer 1			1529 bp upstream
Rr523392	regulatory region 523392			991 bp proximal
Rr523393	regulatory region 523393			1353 bp proximal
Rr523394	regulatory region 523394			1814 bp proximal
Tssr5034	transcription start site region 5034			1851 bp downstream
Tssr143060	transcription start site region 143060			1571 bp upstream
Tssr143061	transcription start site region 143061			1955 bp upstream
Tssr146764	transcription start site region 146764			1282 bp downstream
Tssr146765	transcription start site region 146765			1360 bp downstream
Tssr146766	transcription start site region 146766			1416 bp downstream
Tssr146767	transcription start site region 146767			1442 bp downstream
Tssr146768	transcription start site region 146768			1492 bp downstream
Tssr146769	transcription start site region 146769			1800 bp downstream
Tssr146770	transcription start site region 146770			1836 bp downstream
Tssr146771	transcription start site region 146771			1864 bp downstream