rs234115412 SNP Detail

Summary

• ID
  rs234115412
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:137191490 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAACATGA AACGACCAAA
  AATGTATTGA AAATCCAAAG CATAATAAGC TTGCAGTGTT TGTGGCAGCT TGCTCCTGTG
  TTGTGTCTCA AGCCTTCCCT GCAGCCTTGG ATTTGAACGC AGAACACGGT CTCTTTACAC
  TGTGTGTGCC ATCATCTGTC TAACAAATGC TCGCCAAAGC TGCCTAAAAC ACCACTATTC
  Y
  ATCTTATAAA TTTTAGTGTT TTAAATATAT GCTATATATA TATATTATTT TATATAATGT
  ATTATATCAT ATATAACAGT CACATATTAC ATTTATTACA TATTATATAT TATAATAATA
  TTGCTGTGTG CTTATGGGGT GTTTTAGCTA TTTTTATATT GCTGTTGTAT AATATAATTG
  CTTAATTATA TAATTTTAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366873562	MGP_WTSI_5_137635276	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs234115412					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366873562	MGP_WTSI_5_137635276	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:137191490 () rs orientation: forward

Symbol	Name	Function Class
Muc17	mucin 17, cell surface associated	within coordinates
Tssr1697	transcription start site region 1697	1850 bp upstream
Tssr49319	transcription start site region 49319	1686 bp downstream
Tssr49320	transcription start site region 49320	1674 bp downstream
Tssr53954	transcription start site region 53954	1756 bp upstream
Tssr53955	transcription start site region 53955	1740 bp upstream
Tssr53956	transcription start site region 53956	1721 bp upstream
Tssr53957	transcription start site region 53957	1704 bp upstream
Tssr53958	transcription start site region 53958	1649 bp upstream
Tssr53959	transcription start site region 53959	1636 bp upstream
Tssr53960	transcription start site region 53960	1570 bp upstream
Tssr53961	transcription start site region 53961	1471 bp upstream
Tssr53962	transcription start site region 53962	1453 bp upstream
Tssr53963	transcription start site region 53963	1414 bp upstream
Tssr53964	transcription start site region 53964	1374 bp upstream
Tssr53965	transcription start site region 53965	1349 bp upstream
Tssr53966	transcription start site region 53966	480 bp upstream
Tssr53967	transcription start site region 53967	447 bp upstream