rs234121985 SNP Detail

Summary

• ID
  rs234121985
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141267881 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGAACTGA ACTCAGGACC
  TCTGGAAGAG CAGACAGTGC TATTAATTCC TGAGCATGAG CCATCTCTCC AACCCTAAAA
  CTATATATTT ATATTTTTAT TATTTTTTTT TTTTTACAAA ATATCCTCCT AGATTAGCCA
  GAGGGTTTGT TAATAGTAGT ACTGTTGCCA GTCCTGGTGG CAAGGTCCTT AATCCTAACA
  T
  TTAGGGGACA GAGGCAGGAC TATCTCTGTG AGCTCTAGAA CAGTCATAGC TATATAGAGA
  CAACCCTGTC TTTAAAAAAA AAAAAAAAAT CTGTCCATCA GAAAACTCAG CAGGTAAAGG
  TGGCTTGCCA CCAAACCCCA AACCTTACAC ACGGTAGGAG GAGAGAAGCC CCCACAGGAA
  TGCAGTGACA CCCACCCACC                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321387953	CHEV_4_141096485	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs234121985					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141267881 () rs orientation: forward

Symbol	Name	Function Class
B830004H01Rik	RIKEN cDNA B830004H01 gene	within coordinates
Cpgi15234	CpG island 15234	1485 bp distal
Gm68462	predicted gene, 68462	within coordinates
Rr603789	regulatory region 603789	1483 bp distal
Rr603790	regulatory region 603790	1187 bp proximal
Spen	spen family transcription repressor	1973 bp upstream
Tssr44322	transcription start site region 44322	1944 bp upstream