rs234125149 SNP Detail

Summary

• ID
  rs234125149
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:75414541 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTGCTGAC ACAGAGGACA
  GTTTCTCTAC CAGGTAAACG TGTTTCTCGT CCCTTTGCTC GCTGGAAGTG TTTGGGACCT
  GGCTGGGGCT CTGCTGCTGG GTGCTGTGGG TTTTGTCTAG AAGGGGCTAA GCACCTGTCT
  TCTCAGCCCT GTGTGTCTTG CCTCCCTCTA ACAGAGACCA GCAGCCACCT GGGGTGGCTG
  R
  GGGTGTGGGG GGTGTGGTGG GGGGAAATAT GGGGGGGGAG TTTTTTGGCT TAGTTCTTGC
  CAAGTTCTCT GCATTTATCA TCCCCCACCC CAAAACCTGA GTTACTTTTC CCCATCTTTA
  AAGCCAAGCC ATGTTTTGAT ACCTGTCAGT TGGACTATTT TAGGAAGGCT ATTTACTCTC
  ATTTGGTCAA CTTTAAGATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss391577267	MGP_WTSI_14_75576908	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	A	G	G	G	G	A	A	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs234125149					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	A	G	G	G	G	A	A	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss391577267	MGP_WTSI_14_75576908	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:75414541 () rs orientation: forward

Symbol	Name	Function Class
Lcp1	lymphocyte cytosolic protein 1	within coordinates
Rr369874	regulatory region 369874	909 bp upstream
Rr404213	regulatory region 404213	119 bp downstream
Rr495436	regulatory region 495436	1696 bp distal
Tssr126623	transcription start site region 126623	496 bp downstream
Tssr126624	transcription start site region 126624	458 bp downstream
Tssr126625	transcription start site region 126625	304 bp downstream
Tssr126626	transcription start site region 126626	279 bp downstream
Tssr126627	transcription start site region 126627	197 bp downstream
Tssr126628	transcription start site region 126628	33 bp upstream
Tssr126629	transcription start site region 126629	708 bp upstream
Tssr126630	transcription start site region 126630	747 bp upstream
Tssr129769	transcription start site region 129769	498 bp upstream
Tssr129770	transcription start site region 129770	419 bp upstream
Tssr129771	transcription start site region 129771	1300 bp downstream