rs234131037 SNP Detail

Summary

• ID
  rs234131037
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:156766769 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGCG GGACCCCCCT CCGTGTCCGC
  R
  CGCGGCCTCC GCCGCCGCGG CGCCG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss639279460	FVB_NJ_1_158869330	EVA_MGPV3	EVA_MGPV3	f	SNP	A	G	G	A	G	G	A	A	G	A	A	A	G	G	G	G	G	G	G	A	A	A	G	G	A	A	G	G	A	G	G	A	A	G	G	A	A	A	G	G	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs234131037					SNP	A	G	G	A	G	G	A	A	G	A	A	A	G	G	G	G	G	G	G	A	A	A	G	G	A	A	G	G	A	G	G	A	A	G	G	A	A	A	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss639279460	FVB_NJ_1_158869330	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156766769 () rs orientation: forward

Symbol	Name	Function Class
4930439D14Rik	RIKEN cDNA 4930439D14 gene	within coordinates
Cpgi904	CpG island 904	within coordinates
Ralgps2	Ral GEF with PH domain and SH3 binding motif 2	within coordinates
Rr28786	regulatory region 28786	within coordinates
Rr367037	regulatory region 367037	200 bp downstream
Tssr9581	transcription start site region 9581	458 bp upstream
Tssr14474	transcription start site region 14474	1357 bp upstream
Tssr14475	transcription start site region 14475	390 bp upstream
Tssr14476	transcription start site region 14476	346 bp upstream
Tssr14477	transcription start site region 14477	334 bp downstream
Tssr14478	transcription start site region 14478	354 bp downstream
Tssr14479	transcription start site region 14479	429 bp downstream
Tssr14480	transcription start site region 14480	827 bp downstream