rs234131399 SNP Detail

Summary

• ID
  rs234131399
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:56811050 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTCCCGTC CCAAGCCGGT
  GCTTTCTATC GGAAGGAAGT TGCCATCTTT TTTTCTTCAC CCTTTGGCCG GTCATCTAAT
  GAGTCAGTGG CATAAAGTAA TAAAAGAGAA CTAGAGATTG TGGCTTCCCG GTTCTGATGG
  TGCAAACTTT GCGCTGCCTG TGGGTGAGCC AAGTCCGCAG GAGCAGCTGA CTTGGGCATG
  Y
  GAGCTTCATC TCTGGGAGAG AGCTCTGCAG GGTTTCCATA ATAATAATTG ACCTGGGATC
  TCCAAGTGGC ACCGAGTGCC ATTGTTTACT AGTAAGCTTG TTAGTGTGCT CCACGCAGAG
  GACCTAAGCC TGCCTGGGCT GCGTAACCCA TCCGGTTGCA TGGTTGCACG CAGGTTGTAT
  ATTATAGTGA CTAAGCCCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325859393	CHEV_19_56897108	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs234131399					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:56811050 () rs orientation: forward

Symbol	Name	Function Class
1700010L13Rik	RIKEN cDNA 1700010L13 gene	76 bp downstream
Ccdc186	coiled-coil domain containing 186	428 bp upstream
Cpgi11092	CpG island 11092	within coordinates
Rr406045	regulatory region 406045	200 bp downstream
Rr550140	regulatory region 550140	702 bp distal
Rr550141	regulatory region 550141	439 bp distal
Rr550142	regulatory region 550142	within coordinates
Tssr157215	transcription start site region 157215	654 bp downstream
Tssr159886	transcription start site region 159886	531 bp upstream
Tssr159887	transcription start site region 159887	398 bp upstream