rs234138838 SNP Detail

Summary

• ID
  rs234138838
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:157119831 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTCAAAGAGA AATTACTGCA GAGAGCTAGT GACTGCTGTA
  TGGAGGAGTG GTCCGACTCC CCGCTACATA TCTGGAGTGA TACTGAAGAG AAGCAGCATT
  R
  CTGTATTGCA AAATTCTACA TGTTCACAAT AGTTAATTAG CACACATCTA GGCTGTCATC
  AGAACGCAAG GGCTGAAATA TTTCCTTCCT TTTAAAGTA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320585256	CHEV_2_157103647	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs234138838					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:157119831 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mroh8	maestro heat-like repeat family member 8			Intron
				Noncoding-Transcript-Variant
Rpn2	ribophorin II			1187 bp upstream
Rr397441	regulatory region 397441			837 bp upstream
Rr568459	regulatory region 568459			658 bp proximal
Rr568460	regulatory region 568460			1628 bp proximal
Tssr21228	transcription start site region 21228			1087 bp upstream
Tssr21229	transcription start site region 21229			1115 bp upstream
Tssr21230	transcription start site region 21230			1154 bp upstream
Tssr21231	transcription start site region 21231			1367 bp upstream
Tssr27165	transcription start site region 27165			1601 bp downstream
Tssr27166	transcription start site region 27166			1608 bp downstream
Tssr27167	transcription start site region 27167			1645 bp downstream