rs234138838 SNP Detail

Summary

• ID
  rs234138838
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:157119831 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTCAAAGAGA AATTACTGCA GAGAGCTAGT GACTGCTGTA
  TGGAGGAGTG GTCCGACTCC CCGCTACATA TCTGGAGTGA TACTGAAGAG AAGCAGCATT
  R
  CTGTATTGCA AAATTCTACA TGTTCACAAT AGTTAATTAG CACACATCTA GGCTGTCATC
  AGAACGCAAG GGCTGAAATA TTTCCTTCCT TTTAAAGTA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320585256	CHEV_2_157103647	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs234138838					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:157119831 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12571	CpG island 12571	910 bp proximal
Mroh8	maestro heat-like repeat family member 8	within coordinates
Rpn2	ribophorin II	1187 bp upstream
Rr397441	regulatory region 397441	837 bp upstream
Rr568459	regulatory region 568459	658 bp proximal
Rr568460	regulatory region 568460	1628 bp proximal
Tssr21228	transcription start site region 21228	1087 bp upstream
Tssr21229	transcription start site region 21229	1115 bp upstream
Tssr21230	transcription start site region 21230	1154 bp upstream
Tssr21231	transcription start site region 21231	1367 bp upstream
Tssr27165	transcription start site region 27165	1601 bp downstream
Tssr27166	transcription start site region 27166	1608 bp downstream
Tssr27167	transcription start site region 27167	1645 bp downstream