rs234139754 SNP Detail

Summary

• ID
  rs234139754
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:151959590 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCTTTGGC ACATAGGACT
  TAGGGACAGG TTTACATGAG GAAAGCAGAA TCTTTGTGTT AGAAGAAAAG AAAGAAAAGA
  AAGTTTAAAA AGAAGAAATT AGGCAAAGAT TAAAAACAAG ATACAATATT TATCAAAAGA
  TAGAAATGAG TTTCAACCCT TTATTTGGAT CATCACAGCC TGATTAGATA TTCTCTAAAA
  Y
  TTAAGTCAAA CTTACAGAAA ATATGAGTGC AGAAATTTTA TTAAATCAAA AAATTTTCAG
  AAATGAAACC CCAGTTAATG TTAGCTTTTT ACTGAGGCTG AAGGACAGTA AAATATAAAA
  ATCAGATATT GAACTCTAGC TAAAAAGTCC ATTTTTTTCC ATCCTATTAT TAAAGATTAA
  AATTAACACC ACTCCCTTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss360262514	MGP_WTSI_3_151916917	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs234139754					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss360262514	MGP_WTSI_3_151916917	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151959590 () rs orientation: forward

Symbol	Name	Function Class
Gm43185	predicted gene 43185	1150 bp upstream
Nexn	nexilin	Intron
Tssr1100	transcription start site region 1100	1040 bp downstream
Tssr32404	transcription start site region 32404	312 bp downstream
Tssr36193	transcription start site region 36193	1104 bp upstream
Tssr36194	transcription start site region 36194	990 bp upstream
Tssr36195	transcription start site region 36195	877 bp upstream
Tssr36196	transcription start site region 36196	850 bp upstream
Tssr36197	transcription start site region 36197	819 bp upstream
Tssr36198	transcription start site region 36198	263 bp upstream
Tssr36199	transcription start site region 36199	239 bp upstream
Tssr36200	transcription start site region 36200	203 bp upstream
Tssr36201	transcription start site region 36201	187 bp upstream
Tssr36202	transcription start site region 36202	141 bp upstream
Tssr36203	transcription start site region 36203	1380 bp downstream
Tssr36204	transcription start site region 36204	1402 bp downstream