rs234140117 SNP Detail

Summary

• ID
  rs234140117
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:68597625 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTCCCCAG TTCACAGCCA
  CAGGGACCTC ACTGATCAGA GCTGCTATGG TGTCCTTCTT ATTGGCTTGG CTTCGCCCTT
  TTCAACAGAG GTCCACCCTG CTGAGTAAGT GCTCACTGAT CTCTTCTGTC CAGGCTTTAG
  TGGACTTCAG AAGGAAGAGG CACCGGCTCT TCTCTCCCGT GCTCCCAAAG GCTTGTGGTT
  W
  TGGAGATGGT TGCCTCAATA GGAGGTGGGC TCTGACAGCT GGATGGGTCT GGGGGAAGCC
  AGACACATGG CAGGCTCCAA GTCAATGACC AAGCAGGGCC TCCTCTCTCT GCACACCCAG
  TGAGGCTGTC TTGGGGTAGA AAGGAGTTAA GTTCCAAGGA ATCTCCTACC CCAAACCTCC
  AAATTACAGC TTGTCATTGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358306615	MGP_WTSI_3_68494214	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs234140117					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358306615	MGP_WTSI_3_68494214	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:68597625 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13252	CpG island 13252	846 bp proximal
Gm66274	predicted gene, 66274	within coordinates
Il12a	interleukin 12a	352 bp upstream
Rr578059	regulatory region 578059	970 bp proximal
Tssr29479	transcription start site region 29479	1037 bp upstream
Tssr29480	transcription start site region 29480	1075 bp upstream
Tssr29481	transcription start site region 29481	1080 bp upstream
Tssr29482	transcription start site region 29482	1138 bp upstream
Tssr29483	transcription start site region 29483	1204 bp upstream
Tssr29484	transcription start site region 29484	1335 bp upstream
Tssr29485	transcription start site region 29485	1632 bp upstream
Tssr29486	transcription start site region 29486	1653 bp upstream
Tssr29487	transcription start site region 29487	1763 bp upstream
Tssr29488	transcription start site region 29488	1781 bp upstream
Tssr33509	transcription start site region 33509	1912 bp downstream