rs234153487 SNP Detail

Summary

• ID
  rs234153487
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:38107372 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGAGGGCAC CTCATTCTCG
  TCGTCAGCTT CTTGATAACT GATAGCACAA TGCTTTTCTA AAGGACCCCT GCAGCTGTAC
  TACTGTCTTC ACTACTACAC CCTCCAATAA CATGTGTCTC TGTCTAATGT CTATCGCCCT
  CAACTTATGC CACCAACAAC TTGAGGTCAC GACTTATCAA TGCTCCACAG AATCTACCCC
  M
  CCCCCCGTCT CTCTTAGCCC CACTGTTTTC CTATTGGGTG GGCTAGAGGA TGCCAATCAG
  ATGGTAATAG TTTTTCAGGC TCTACCCTGA TTCACGCTTA GGCATCCTAT TCACTTCCTC
  CGGTTGACAG CTGGGATGCC TAGGGGCAAA AGATGCTCAC TATCCAGCTT CAAATACTCA
  TTAGAATTTG TATTTGGAGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss402412055	MGP_WTSI_19_38193414	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	A	C	C	A	C	C	A	A	A	A	A	A	A	C	C	C	A	C	C	C	C	C	C	A	C	C	A	A	C	C	C	C	C	A	C	C	A	C	C	C	C	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs234153487					SNP	C	C	A	C	C	A	C	C	A	A	A	A	A	A	A	C	C	C	A	C	C	C	C	C	C	A	C	C	A	A	C	C	C	C	C	A	C	C	A	C	C	C	C	C	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss402412055	MGP_WTSI_19_38193414	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:38107372 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10802	CpG island 10802	300 bp proximal
Rbp4	retinol binding protein 4, plasma	Intron
Rr547239	regulatory region 547239	989 bp proximal
Tssr156245	transcription start site region 156245	590 bp downstream
Tssr159114	transcription start site region 159114	605 bp upstream
Tssr159115	transcription start site region 159115	549 bp upstream
Tssr159116	transcription start site region 159116	447 bp upstream
Tssr159117	transcription start site region 159117	433 bp upstream