rs234154290 SNP Detail

Summary

• ID
  rs234154290
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:74701979 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GAGGAGCCT TTAAGAGCAG GTACCGTTGG
  ATCCTATGCC TTCAATTGTT GCAATACTGA GATTATTTGC ATAAAAACTA TTCCCTTTAT
  TGTCTGGAAA GTTACTAGCG ATTTACTGAT TAGACTCTAA GCCTGGCCCT GAAAGTTATC
  R
  AATGTTCTCA GGGAGTGAAG AAGTGGGAAG ATATTCAAGT TACAAAGTAG CTTTAGAAAG
  ATACAGCATG GCCTGAACAG AGGTCCGAGC TCAGTTGTGT TTGTTGGGAG CCATTCTGTG
  AGCTGGGCTT ATTAGGGCCC AAGACTTAAC                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319795110	CHEV_1_74709394	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs234154290					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:74701979 () rs orientation: forward

Symbol	Name	Function Class
Cpgi388	CpG island 388	614 bp distal
Gm70804	predicted gene, 70804	1407 bp upstream
Rr371526	regulatory region 371526	within coordinates
Rr413230	regulatory region 413230	1426 bp distal
Rr413231	regulatory region 413231	1065 bp distal
Rr413232	regulatory region 413232	within coordinates
Rr413233	regulatory region 413233	1001 bp distal
Tssr7442	transcription start site region 7442	1252 bp downstream
Tssr7443	transcription start site region 7443	1164 bp downstream
Tssr7444	transcription start site region 7444	1107 bp downstream
Tssr7445	transcription start site region 7445	1031 bp downstream
Tssr7446	transcription start site region 7446	988 bp downstream
Tssr7447	transcription start site region 7447	704 bp downstream
Ttll4	tubulin tyrosine ligase-like family, member 4	Intron