rs234167444 SNP Detail

Summary

• ID
  rs234167444
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:30304635 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCCACACA CCTGCCCAGC
  TGTTTCCCTT CCAGACCTCA GGGCCTTGGT GGCCACCCCT CTTTTGGTGG TTTGTTTGTT
  TTTTCTAAAT GAGTTCTGGA TCATCCAGGT TGGGATCAAT AGTGGGGGAA ATACACTTTT
  GTGCTTCTGC TGTGAGTAAT AAGCCAAAAG ACCCCATTTG GGCTCAGTTT ATTAGCACAA
  M
  CATGGGATTT GATTGTCTCC TTGTTTCAGT CTCCCTAGCA TTAAAATGCT TATGCAGTAA
  GGTGGTCCCA GAGGGTGACG GAAGGCGGGA CGACTTGGAG GAGGGTCTCA GGTGCTGCCA
  GGACTCTTAG TAGAATCTCA GTCTTAGCTG CCAACCCAGT GTCTGACAGG GCAGTCCAGT
  TCACAGCTGG ATAGACAGCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss353515391	MGP_WTSI_2_30270143	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs234167444					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353515391	MGP_WTSI_2_30270143	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:30304635 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11436	CpG island 11436	468 bp proximal
Crat	carnitine acetyltransferase	within coordinates
Gm16323	predicted gene 16323	within coordinates
Ptpa	protein phosphatase 2 protein activator	1427 bp upstream
Rr554310	regulatory region 554310	897 bp distal
Rr554311	regulatory region 554311	235 bp distal
Rr554312	regulatory region 554312	61 bp proximal
Rr554313	regulatory region 554313	891 bp proximal
Rr554314	regulatory region 554314	1530 bp proximal
Tssr17115	transcription start site region 17115	995 bp upstream
Tssr17116	transcription start site region 17116	1408 bp upstream
Tssr17117	transcription start site region 17117	1457 bp upstream
Tssr17118	transcription start site region 17118	1473 bp upstream
Tssr17119	transcription start site region 17119	1564 bp upstream
Tssr23368	transcription start site region 23368	1324 bp upstream
Tssr23369	transcription start site region 23369	505 bp upstream
Tssr23370	transcription start site region 23370	443 bp upstream
Tssr23371	transcription start site region 23371	679 bp downstream
Tssr23372	transcription start site region 23372	766 bp downstream
Tssr23373	transcription start site region 23373	795 bp downstream
Tssr23374	transcription start site region 23374	815 bp downstream
Tssr23375	transcription start site region 23375	837 bp downstream
Tssr23376	transcription start site region 23376	886 bp downstream
Tssr23377	transcription start site region 23377	949 bp downstream
Tssr23378	transcription start site region 23378	991 bp downstream
Tssr23379	transcription start site region 23379	1011 bp downstream
Tssr23380	transcription start site region 23380	1144 bp downstream
Tssr23381	transcription start site region 23381	1380 bp downstream