rs234169240 SNP Detail

Summary

• ID
  rs234169240
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141547063 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGTCTGGC GTGGGCAGTG
  GCTGCCATTT TCTTTTGTTG GAGAAGGATG AGGCAGAAAA GACTCGGAAG GAGAGTTTCT
  GGTTTCTTCC AGGCTCCACA CGGCCTTGAT CTAGAATGTT CCTGACATCT AGCTATGTGT
  CTGCCCTTGG CTTAGAATTC CTCTTTTTGC GGGGCTAGTT CCACAGGTTT CTCTTACTTT
  Y
  CTATGAGAAA GAGCTGTCGA GAGCTGGAAA AATACTCCGG GGTCAGGGTA GTTTTCCTCA
  TGACCCAAGT GACATTGTCT ACATCACTGC CATGGTTGGC CAGGATAAAC GTCATTTAAT
  TCTGTGTGTG TGTGTGTGTG TGTGTATGTG GATGTCAGAA GTCAACCTGT AGTGCACTGG
  TTCTCAACCT TCCTAATGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321390086	CHEV_4_141375667	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs234169240					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141547063 () rs orientation: forward

Symbol	Name	Function Class
Cela2a	chymotrypsin-like elastase family, member 2A	within coordinates
Cpgi15246	CpG island 15246	675 bp distal
D4Mit32	DNA segment, Chr 4, Massachusetts Institute of Technology 32	99 bp proximal
Gm56298	predicted gene, 56298	within coordinates
Rr603893	regulatory region 603893	793 bp distal
Tssr40105	transcription start site region 40105	1853 bp downstream
Tssr40106	transcription start site region 40106	1822 bp downstream
Tssr40107	transcription start site region 40107	1770 bp downstream
Tssr40108	transcription start site region 40108	708 bp downstream
Tssr40109	transcription start site region 40109	673 bp downstream
Tssr40110	transcription start site region 40110	650 bp downstream
Tssr40111	transcription start site region 40111	1573 bp upstream
Tssr40112	transcription start site region 40112	1601 bp upstream
Tssr40113	transcription start site region 40113	1630 bp upstream
Tssr40114	transcription start site region 40114	1952 bp upstream
Tssr40115	transcription start site region 40115	1986 bp upstream
Tssr44369	transcription start site region 44369	1855 bp upstream
Tssr44370	transcription start site region 44370	1815 bp upstream
Tssr44371	transcription start site region 44371	1784 bp upstream
Tssr44372	transcription start site region 44372	1753 bp upstream
Tssr44373	transcription start site region 44373	1466 bp upstream
Tssr44374	transcription start site region 44374	620 bp upstream
Tssr44375	transcription start site region 44375	387 bp upstream
Tssr44376	transcription start site region 44376	369 bp upstream
Tssr44377	transcription start site region 44377	232 bp downstream
Tssr44378	transcription start site region 44378	351 bp downstream
Tssr44379	transcription start site region 44379	1600 bp downstream
Tssr44380	transcription start site region 44380	1612 bp downstream
Tssr44381	transcription start site region 44381	1968 bp downstream
Tssr44382	transcription start site region 44382	1987 bp downstream