ACCTTTGTTT CAGGTTGTGA AGGTAGCAGG TGTTTACGCC AGAGAGCTTG GAAATGAGGA AGCGTAGAGA GGGACTGCGG CCATGACTCC TACACAGAGA AACAGTCCCT GGTGGGGAGC ACCCCTAAGC ACTGATTTAC CAAGGTGGTT TGGACTCCGG GTGCCGTGGG ACCTACCCAT GTCCAGCCTG GCCGCGTGCC Y CTCTGCACCT GCCACCTCAC CTGTGCCCCC TTGCCTGCAG CCCTCTGTTT TGCTGTGACC CGCTCACTGC TGCTGACATG CCTGGTGCCG GCCGGGCTCC TGGCCCTGCG CTACTACTAC AGCCGCAAGG TGATTCTGGC CTACCTGGAG TGTGCGCTGC ACACGGACAT GGCTGACATT GAGCAGTACT ACATGAAGCC Y = C/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129P2/OlaHsd |
129S1/SvImJ |
129S5/SvEvBrd |
A/J |
AKR/J |
B10.RIII-H2 |
BALB/cByJ |
BALB/cJ |
BTBR T<+> Itpr3 |
BUB/BnJ |
C3H/HeH |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C57BR/cdJ |
C57L/J |
C58/J |
CAST/EiJ |
CBA/J |
CE/J |
CZECHII/EiJ |
DBA/1J |
DBA/2J |
FVB/NJ |
I/LnJ |
JF1/MsJ |
KK/HlJ |
LEWES/EiJ |
LG/J |
LP/J |
MA/MyJ |
MOLF/EiJ |
NOD/ShiLtJ |
NON/ShiLtJ |
NZB/BlNJ |
NZO/HlLtJ |
NZW/LacJ |
PL/J |
PWK/PhJ |
QSi3/Ianm |
QSi5/Ianm |
RF/J |
RIIIS/J |
SEA/GnJ |
SJL/J |
SM/J |
SPRET/EiJ |
ST/bJ |
SWR/J |
WSB/EiJ |
ZALENDE/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss364490777 | MGP_WTSI_5_34340977 | EVA_MGPV3 | EVA_MGPV3 | f | SNP | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | C | T | T | T | T |
SNP Consensus Information | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
SNP | Consensus Type | 129P2/OlaHsd |
129S1/SvImJ |
129S5/SvEvBrd |
A/J |
AKR/J |
B10.RIII-H2 |
BALB/cByJ |
BALB/cJ |
BTBR T<+> Itpr3 |
BUB/BnJ |
C3H/HeH |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C57BR/cdJ |
C57L/J |
C58/J |
CAST/EiJ |
CBA/J |
CE/J |
CZECHII/EiJ |
DBA/1J |
DBA/2J |
FVB/NJ |
I/LnJ |
JF1/MsJ |
KK/HlJ |
LEWES/EiJ |
LG/J |
LP/J |
MA/MyJ |
MOLF/EiJ |
NOD/ShiLtJ |
NON/ShiLtJ |
NZB/BlNJ |
NZO/HlLtJ |
NZW/LacJ |
PL/J |
PWK/PhJ |
QSi3/Ianm |
QSi5/Ianm |
RF/J |
RIIIS/J |
SEA/GnJ |
SJL/J |
SM/J |
SPRET/EiJ |
ST/bJ |
SWR/J |
WSB/EiJ |
ZALENDE/EiJ |
||||
rs234176619 | SNP | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | C | T | T | T | T |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss364490777 | MGP_WTSI_5_34340977 | SC_MOUSE_GENOMES | SC_MOUSE_GENOMES | f | SNP | C/T |
Location: Chr5:34155672 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi15746 | CpG island 15746 | 285 bp distal | ||||||
Nat8l | N-acetyltransferase 8-like | within coordinates | ||||||
Rr609650 | regulatory region 609650 | 1208 bp proximal | ||||||
Tssr1458 | transcription start site region 1458 | 1538 bp downstream | ||||||
Tssr45850 | transcription start site region 45850 | 1904 bp downstream | ||||||
Tssr45851 | transcription start site region 45851 | 1734 bp downstream | ||||||
Tssr45852 | transcription start site region 45852 | 1696 bp downstream | ||||||
Tssr45853 | transcription start site region 45853 | 1638 bp downstream | ||||||
Tssr45854 | transcription start site region 45854 | 1599 bp downstream | ||||||
Tssr45855 | transcription start site region 45855 | 1583 bp downstream | ||||||
Tssr45856 | transcription start site region 45856 | 1565 bp downstream | ||||||
Tssr45857 | transcription start site region 45857 | 1547 bp downstream | ||||||
Tssr50625 | transcription start site region 50625 | 1780 bp upstream | ||||||
Tssr50626 | transcription start site region 50626 | 739 bp upstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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