rs234179029 SNP Detail

Summary

• ID
  rs234179029
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:45316069 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCCTCTCA GAAGGACTGA
  CTGCACCAGG GGAGCAAATA TCTGTCTGTC TGTCTGTCTA TCACCTATCC ATTCATAAAT
  CCTTTATAGA TCTAGCTATC CTCTATGTAG TTTGTATGTA TGCATGCGCA TATGTATATA
  TGTATGCCTG TATGTATGTA GCTATGTATG TGTATATATA TGTATTATGC ATGCACTCAT
  S
  CATCTATCTC TATCTATCTA TCTATCTATC TATCTATCTA TCTATCTATC TATCTATCAT
  CTATCCATCT ATCCATAAAT CTATTATCCA TCTTGGTATC ATTTCTCCAT CAACCTATCA
  CTTATATAGC TTGTATGCAT GCAGGTATGC ATGCAGGTAT GTATGTATGT ATGTATGTAT
  GTATGTATGT ATCTATCTAT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	LEWES/EiJ	LG/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	ZALENDE/EiJ
ss377432940	MGP_WTSI_9_45212854	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	LEWES/EiJ	LG/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	ZALENDE/EiJ
rs234179029					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377432940	MGP_WTSI_9_45212854	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45316069 () rs orientation: forward

Symbol	Name	Function Class
Fxyd2	FXYD domain-containing ion transport regulator 2	within coordinates
Gm68814	predicted gene, 68814	within coordinates
Rr677905	regulatory region 677905	638 bp proximal
Rr677906	regulatory region 677906	975 bp proximal
Tssr84785	transcription start site region 84785	1613 bp downstream
Tssr84786	transcription start site region 84786	1582 bp downstream
Tssr84787	transcription start site region 84787	1561 bp downstream
Tssr84788	transcription start site region 84788	1530 bp downstream
Tssr84789	transcription start site region 84789	1503 bp downstream
Tssr84790	transcription start site region 84790	1164 bp upstream
Tssr84791	transcription start site region 84791	1295 bp upstream
Tssr84792	transcription start site region 84792	1343 bp upstream