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rs234179113 SNP Detail
Summary
  • ID
    rs234179113
  • Variation Type
    SNP
  • Alleles
    C/G
Genome Location and Flanking Sequence
  • Location
    Chr19:5848990 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                AAAAGAGAAA AAAGGCACTT
ATCTATCCCT AACATGCAAT ACTGCAGATC CAAGTTACAC TTATCTGTCA ACAGCAGTCT
GCTGTTTCCT GCTCCGAGAT GGAATGAAGC AACTCTTCTG CTTATGAAGA GAAACCTGTC
TGAGGCAAAC GAAACATTGG CACACTGCAC CGCCTCGCAG CCGCTCGATC CCACTCATCT
S
AACAAGCTCA GCTTCTTTTT ACTCCAGGCT TAATGCAGCA TTTTCACTTC ATTTCTATTC
TGCTTTTGTA AAAGCAGTTT TGAGATGAAC ATTTGATCTT CACTGTTTTT CATCAATTCT
TTACTTTTGT GGATAAAGCT TGGTAGATAA GCCATAACTT TTAAAGGTAT TGCCATAACT
TTATACTGGT TGCTTTCATT                                            

S = C/G

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss401662588 MGP_WTSI_19_5798962 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs234179113 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss401662588 MGP_WTSI_19_5798962 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr19:5848990 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Gm55521 predicted gene, 55521 38 bp downstream
Malat1 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) within coordinates
Rr543161 regulatory region 543161 597 bp distal
Rr543162 regulatory region 543162 within coordinates
Rr543163 regulatory region 543163 456 bp proximal
Tssr5416 transcription start site region 5416 1647 bp upstream
Tssr5417 transcription start site region 5417 64 bp downstream
Tssr5418 transcription start site region 5418 547 bp downstream
Tssr5419 transcription start site region 5419 1201 bp downstream
Tssr5420 transcription start site region 5420 1218 bp downstream
Tssr157651 transcription start site region 157651 1998 bp upstream
Tssr157652 transcription start site region 157652 1858 bp upstream
Tssr157653 transcription start site region 157653 1774 bp upstream
Tssr157654 transcription start site region 157654 1720 bp upstream
Tssr157655 transcription start site region 157655 1694 bp upstream
Tssr157656 transcription start site region 157656 1661 bp upstream
Tssr157657 transcription start site region 157657 1541 bp upstream
Tssr157658 transcription start site region 157658 1435 bp upstream
Tssr157659 transcription start site region 157659 1331 bp upstream
Tssr157660 transcription start site region 157660 1235 bp upstream
Tssr157661 transcription start site region 157661 1202 bp upstream
Tssr157662 transcription start site region 157662 1109 bp upstream
Tssr157663 transcription start site region 157663 1048 bp upstream
Tssr157664 transcription start site region 157664 934 bp upstream
Tssr157665 transcription start site region 157665 925 bp upstream
Tssr157666 transcription start site region 157666 893 bp upstream
Tssr157667 transcription start site region 157667 639 bp upstream
Tssr157668 transcription start site region 157668 598 bp upstream
Tssr157669 transcription start site region 157669 579 bp upstream
Tssr157670 transcription start site region 157670 563 bp upstream
Tssr157671 transcription start site region 157671 542 bp upstream
Tssr157672 transcription start site region 157672 492 bp upstream
Tssr157673 transcription start site region 157673 458 bp upstream
Tssr157674 transcription start site region 157674 446 bp upstream
Tssr157675 transcription start site region 157675 433 bp upstream
Tssr157676 transcription start site region 157676 418 bp upstream
Tssr157677 transcription start site region 157677 396 bp upstream
Tssr157678 transcription start site region 157678 382 bp upstream
Tssr157679 transcription start site region 157679 314 bp upstream
Tssr157680 transcription start site region 157680 287 bp upstream
Tssr157681 transcription start site region 157681 266 bp upstream
Tssr157682 transcription start site region 157682 253 bp upstream
Tssr157683 transcription start site region 157683 217 bp upstream
Tssr157684 transcription start site region 157684 207 bp upstream
Tssr157685 transcription start site region 157685 192 bp upstream
Tssr157686 transcription start site region 157686 131 bp upstream
Tssr157687 transcription start site region 157687 110 bp upstream
Tssr157688 transcription start site region 157688 63 bp upstream
Tssr157689 transcription start site region 157689 26 bp upstream
Tssr157690 transcription start site region 157690 41 bp downstream
Tssr157691 transcription start site region 157691 87 bp downstream
Tssr157692 transcription start site region 157692 141 bp downstream
Tssr157693 transcription start site region 157693 198 bp downstream
Tssr157694 transcription start site region 157694 256 bp downstream
Tssr157695 transcription start site region 157695 320 bp downstream
Tssr157696 transcription start site region 157696 341 bp downstream
Tssr157697 transcription start site region 157697 390 bp downstream
Tssr157698 transcription start site region 157698 406 bp downstream
Tssr157699 transcription start site region 157699 464 bp downstream
Tssr157700 transcription start site region 157700 513 bp downstream
Tssr157701 transcription start site region 157701 531 bp downstream
Tssr157702 transcription start site region 157702 567 bp downstream
Tssr157703 transcription start site region 157703 618 bp downstream
Tssr157704 transcription start site region 157704 644 bp downstream
Tssr157705 transcription start site region 157705 665 bp downstream
Tssr157706 transcription start site region 157706 713 bp downstream
Tssr157707 transcription start site region 157707 759 bp downstream
Tssr157708 transcription start site region 157708 769 bp downstream
Tssr157709 transcription start site region 157709 781 bp downstream
Tssr157710 transcription start site region 157710 800 bp downstream
Tssr157711 transcription start site region 157711 819 bp downstream
Tssr157712 transcription start site region 157712 856 bp downstream
Tssr157713 transcription start site region 157713 883 bp downstream
Tssr157714 transcription start site region 157714 934 bp downstream
Tssr157715 transcription start site region 157715 951 bp downstream
Tssr157716 transcription start site region 157716 995 bp downstream
Tssr157717 transcription start site region 157717 1022 bp downstream
Tssr157718 transcription start site region 157718 1067 bp downstream
Tssr157719 transcription start site region 157719 1121 bp downstream
Tssr157720 transcription start site region 157720 1140 bp downstream
Tssr157721 transcription start site region 157721 1176 bp downstream
Tssr157722 transcription start site region 157722 1193 bp downstream
Tssr157723 transcription start site region 157723 1268 bp downstream
Tssr157724 transcription start site region 157724 1277 bp downstream
Tssr157725 transcription start site region 157725 1323 bp downstream
Tssr157726 transcription start site region 157726 1328 bp downstream
Tssr157727 transcription start site region 157727 1343 bp downstream
Tssr157728 transcription start site region 157728 1440 bp downstream
Tssr157729 transcription start site region 157729 1639 bp downstream
Tssr157730 transcription start site region 157730 1769 bp downstream
Tssr157731 transcription start site region 157731 1792 bp downstream
Tssr157732 transcription start site region 157732 1835 bp downstream
Tssr157733 transcription start site region 157733 1872 bp downstream
Tssr157734 transcription start site region 157734 1889 bp downstream
Tssr157735 transcription start site region 157735 1913 bp downstream
Tssr157736 transcription start site region 157736 1951 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory