TATCTCCATT TCACAGATAA GGAAACACAA AAATATTAAC TTTCCTCATA ACCAAATTCT AGGATTAGAA ATTGCATCTC TCAATATTCC TGCAACCCCC TGCTCCCCAC ACCGTTTCTC TCACTACATT CAGCACAGAA AAGCACAGCG TACAGCTAAT AAAGACAAGC AGCTGGGAGA CCACGCGTTC CTGCCGGCTG Y GTACGACCCA AGATCTGGGT AGAGGGCGCC CCACGCTCAC CCATGGGAAA GGGGCGCTGA GCACTCACAG GCAGCCCAGA CCAGCGTTGG AGTCTGCGCA GAGCCTATTT ACCGCGGGTT CCCGGTGAAC CGTGTGTCCG TGCTTCCCCA GGCCTCCCCG CAGCTCACCC AAAGTAAATG GCAGCAAGAA CAGCAGCAAA Y = C/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129P2/OlaHsd |
129S1/SvImJ |
129S5/SvEvBrd |
A/J |
AKR/J |
B10.RIII-H2 |
BALB/cByJ |
BALB/cJ |
BTBR T<+> Itpr3 |
BUB/BnJ |
C3H/HeH |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C57BR/cdJ |
C57L/J |
C58/J |
CAST/EiJ |
CBA/J |
CE/J |
CZECHII/EiJ |
DBA/1J |
DBA/2J |
FVB/NJ |
I/LnJ |
JF1/MsJ |
KK/HlJ |
LEWES/EiJ |
LG/J |
LP/J |
MA/MyJ |
MOLF/EiJ |
NOD/ShiLtJ |
NON/ShiLtJ |
NZB/BlNJ |
NZO/HlLtJ |
NZW/LacJ |
PL/J |
PWK/PhJ |
QSi3/Ianm |
QSi5/Ianm |
RF/J |
RIIIS/J |
SEA/GnJ |
SJL/J |
SM/J |
SPRET/EiJ |
ST/bJ |
SWR/J |
WSB/EiJ |
ZALENDE/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss352899706 | MGP_WTSI_1_196957213 | EVA_MGPV3 | EVA_MGPV3 | f | SNP | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | T | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | T | C | C |
SNP Consensus Information | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
SNP | Consensus Type | 129P2/OlaHsd |
129S1/SvImJ |
129S5/SvEvBrd |
A/J |
AKR/J |
B10.RIII-H2 |
BALB/cByJ |
BALB/cJ |
BTBR T<+> Itpr3 |
BUB/BnJ |
C3H/HeH |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C57BR/cdJ |
C57L/J |
C58/J |
CAST/EiJ |
CBA/J |
CE/J |
CZECHII/EiJ |
DBA/1J |
DBA/2J |
FVB/NJ |
I/LnJ |
JF1/MsJ |
KK/HlJ |
LEWES/EiJ |
LG/J |
LP/J |
MA/MyJ |
MOLF/EiJ |
NOD/ShiLtJ |
NON/ShiLtJ |
NZB/BlNJ |
NZO/HlLtJ |
NZW/LacJ |
PL/J |
PWK/PhJ |
QSi3/Ianm |
QSi5/Ianm |
RF/J |
RIIIS/J |
SEA/GnJ |
SJL/J |
SM/J |
SPRET/EiJ |
ST/bJ |
SWR/J |
WSB/EiJ |
ZALENDE/EiJ |
||||
rs234193596 | SNP | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | T | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | T | C | C |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss352899706 | MGP_WTSI_1_196957213 | SC_MOUSE_GENOMES | SC_MOUSE_GENOMES | f | SNP | C/T |
Location: Chr1:194813327 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi1251 | CpG island 1251 | within coordinates | ||||||
Cr1l | complement C3b/C4b receptor 1 like | within coordinates | ||||||
Gm32313 | predicted gene, 32313 | 434 bp upstream | ||||||
Rr29235 | regulatory region 29235 | within coordinates | ||||||
Rr372684 | regulatory region 372684 | within coordinates | ||||||
Rr396746 | regulatory region 396746 | 457 bp downstream | ||||||
Tssr383 | transcription start site region 383 | 405 bp downstream | ||||||
Tssr10864 | transcription start site region 10864 | 611 bp upstream | ||||||
Tssr15870 | transcription start site region 15870 | 323 bp downstream | ||||||
Tssr15871 | transcription start site region 15871 | 425 bp downstream | ||||||
Tssr15872 | transcription start site region 15872 | 474 bp downstream | ||||||
Tssr15873 | transcription start site region 15873 | 486 bp downstream | ||||||
Tssr15874 | transcription start site region 15874 | 517 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/10/2024 MGI 6.24 |
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