rs234198987 SNP Detail

Summary

• ID
  rs234198987
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:46857434 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCCTCCTCC ACAGCTCTTT
  TCCGGGTCAC ACGCCGGGCG CACGCACGAC CCGGGCGACT ACGGGTCCTA CGGTGGCCCA
  CTGCGAGCGT GGCAAAGCGG CGCGTGAGTG GAGCATGCGT ATTAGCCGAG GGAGTCAGCA
  ACCAGTGTCC TTCCCAGGTA GTCCGGTGTG AAGCATCCTG CGCTCCACCG GGTCCATCTT
  Y
  CTCTCCCACC CACCACAGCA ATCATCTCCG CATTAGTTAA CCCATACTCC CATCACCGGA
  CTTGTGTGTG TGTGTTGTTG TTGTTTCCCA GCGCTGCCCA AACCCTGCGG TATTTTAGAT
  CATTGGGTCA CTTTGACTTT TAAGTAAAAC CCCTGACCTT CCCTGAGCTG CTGGCAAAAC
  CATGCATTAA GTCCTCGCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325404790	CHEV_17_46683457	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs234198987					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:46857434 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9232	CpG island 9232	within coordinates
Cul9	cullin 9	120 bp upstream
Rr527757	regulatory region 527757	131 bp distal
Rr527758	regulatory region 527758	within coordinates
Rr527759	regulatory region 527759	416 bp proximal
Srf	serum response factor	1821 bp downstream
Tssr148330	transcription start site region 148330	175 bp upstream