rs234199989 SNP Detail

Summary

• ID
  rs234199989
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:175460424 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTAATTTCC ATACGTGACA
  GAAAATATGC AGAACTTGTC TTATGTATTT ATATCTCACT TATCCCAATG TCCTCCAAAT
  CCACTCATTC TTACTGAGAT GACCTAAGAC ACATTTTTGT TTTTAAATAA CAGGATTTCA
  TTCTTCTTTA CCGCCAAACA CTACTCCATT GTGTGTGTGT GTACCATATT TTCTTCATTC
  A
  TTCATTCACC AGCAGCCATC ACGGCAATAA ATATGGGTAA CAGCATTTGT TTTAAATTAT
  TCCTTCCAGG AACTGTATTT GATATCCACT AAATACACGA GTGTCTATTT TATCATTTTG
  ATTTAGCATC CCCTAAAAGA CAAAACAGAT TTCACTTTAT TTTGCTTCCA AACATGACTT
  TTCTTTAAAA CAGGAATGTA                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320151901	CHEV_1_177562989	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs234199989					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:175460424 () rs orientation: forward

Symbol	Name	Function Class
Kmo	kynurenine 3-monooxygenase	within coordinates
Rr396618	regulatory region 396618	739 bp downstream
Tssr10313	transcription start site region 10313	880 bp downstream
Tssr10314	transcription start site region 10314	857 bp downstream
Tssr10315	transcription start site region 10315	834 bp downstream
Tssr10316	transcription start site region 10316	801 bp downstream
Tssr10317	transcription start site region 10317	764 bp downstream
Tssr10318	transcription start site region 10318	757 bp downstream
Tssr10319	transcription start site region 10319	747 bp downstream
Tssr10320	transcription start site region 10320	725 bp downstream
Tssr10321	transcription start site region 10321	707 bp downstream
Tssr10322	transcription start site region 10322	698 bp downstream
Tssr10323	transcription start site region 10323	673 bp downstream