rs234202365 SNP Detail

Summary

• ID
  rs234202365
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:14951022 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAATAGATT CAATACAAAA
  AAATTGTTCT CAAAGTCAAA TAAGAAAAAA AGTGTTAGGT GAAGAGAAAT GTTTAAATAA
  AAATACACAA AAAGAACATT GAAAGGTGTG TCCCCGGGAC ACCCACGGTC CCTGGGAAGC
  CATACAGCTA CCTTTCTTTT CTATTTTTTA AGTTTTGTGT TTTTTGTTTT GTTTTGTTTT
  K
  GGGGGGGGGG GTTGGTTTCG GCTTGTCAAA TACAAATTCC TTTGCCAGGA AGGGGAAGTT
  CTCATCTCCT TGGAAGACAT TTTTAAAATC CAATTCCAAA AAGCAAAGCG ATTTTTGAGA
  ATTGTTGGTT ATGTTACATC AACAGTTCGG TGCCTAGGGT TAATTTGTGG AGCAAGCGGG
  AAGCTGGAGG GCGCCCTGGC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	SEA/GnJ	SPRET/EiJ	WSB/EiJ	ZALENDE/EiJ
ss357061070	MGP_WTSI_3_14885962	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	SEA/GnJ	SPRET/EiJ	WSB/EiJ	ZALENDE/EiJ
rs234202365					SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357061070	MGP_WTSI_3_14885962	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:14951022 () rs orientation: forward

Symbol	Name	Function Class
Car2	carbonic anhydrase 2	311 bp upstream
Cpgi12992	CpG island 12992	53 bp proximal
Rr573722	regulatory region 573722	25 bp proximal
Rr573723	regulatory region 573723	177 bp proximal
Rr573724	regulatory region 573724	477 bp proximal
Rr573725	regulatory region 573725	524 bp proximal
Rr573726	regulatory region 573726	1207 bp proximal
Rr573727	regulatory region 573727	1260 bp proximal
Rr573728	regulatory region 573728	1442 bp proximal
Tssr826	transcription start site region 826	242 bp upstream
Tssr827	transcription start site region 827	456 bp upstream
Tssr828	transcription start site region 828	472 bp upstream
Tssr829	transcription start site region 829	562 bp upstream
Tssr830	transcription start site region 830	643 bp upstream
Tssr831	transcription start site region 831	664 bp upstream
Tssr832	transcription start site region 832	753 bp upstream
Tssr28466	transcription start site region 28466	721 bp upstream
Tssr28467	transcription start site region 28467	853 bp upstream
Tssr28468	transcription start site region 28468	1426 bp upstream