rs234214465 SNP Detail

Summary

• ID
  rs234214465
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:141932645 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTTCAGGA TGTTGGCTGG
  GGGTGATCAG GGCCAGCCAT TGATAGCCAA GCTCAAGGCT GAGAGTCAGG CTGGAGCTGA
  GGGACAGGGA TGCTCTCTGC CTGGCAAAAC CCAAGGCAGG CTTCTAAGAG GAAGCCAGGG
  TCACGGTCCT GAGAAGCTGA GCTGGCTTCA GCCATGGACA TAGCACTTGC TATCACTCTG
  Y
  TTCTCCTGTA AACATTTCTC TCAACTCCCC TACACAATAC CTTCAAACAG AACACAGGGA
  GAGTGGTCTG TACCTACAGC AGTAAATGTT CTTCAGCAAC CAGCGAGTAA GTATGCAAGC
  TTGCCACCTC CGACCTGAGG GGCCTGGGTA ATGTGTCACA TCTGGCCAGG CATCACTCTG
  GGGCACGATT ACCCAAAGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373449938	MGP_WTSI_7_149564813	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs234214465					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373449938	MGP_WTSI_7_149564813	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:141932645 () rs orientation: forward

Symbol	Name	Function Class
Ctsd	cathepsin D	Intron
Gm49369	predicted gene, 49369	Intron
Tssr70134	transcription start site region 70134	1832 bp downstream
Tssr70135	transcription start site region 70135	1777 bp downstream
Tssr70136	transcription start site region 70136	1565 bp downstream
Tssr70137	transcription start site region 70137	1875 bp upstream
Tssr70138	transcription start site region 70138	1923 bp upstream
Tssr70139	transcription start site region 70139	1942 bp upstream
Tssr70140	transcription start site region 70140	1972 bp upstream
Tssr70141	transcription start site region 70141	1985 bp upstream
Tssr75763	transcription start site region 75763	1993 bp upstream
Tssr75764	transcription start site region 75764	1968 bp upstream
Tssr75765	transcription start site region 75765	1848 bp upstream
Tssr75766	transcription start site region 75766	1826 bp upstream
Tssr75767	transcription start site region 75767	1816 bp upstream
Tssr75768	transcription start site region 75768	1794 bp upstream
Tssr75769	transcription start site region 75769	1772 bp upstream
Tssr75770	transcription start site region 75770	1740 bp upstream
Tssr75771	transcription start site region 75771	1514 bp upstream
Tssr75772	transcription start site region 75772	1456 bp upstream
Tssr75773	transcription start site region 75773	1256 bp upstream
Tssr75774	transcription start site region 75774	1882 bp downstream
Tssr75775	transcription start site region 75775	1903 bp downstream
Tssr75776	transcription start site region 75776	1909 bp downstream
Tssr75777	transcription start site region 75777	1942 bp downstream
Tssr75778	transcription start site region 75778	1982 bp downstream