rs234217566 SNP Detail

Summary

• ID
  rs234217566
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:43628557 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTTTAGTT GTTTGCTTTT
  GTTTTTTTGT TTGTTTGTTT CTTTGTTTGT TTGTTTTTTA CTACAGGCCT TGGGAAAGGT
  TGACAGTTTC TCGCTAAGAG TGCATTTTTA CACTGGACTC ACACCTACTA GTGCTGGGGT
  TGGGGACGAC GGCTGAGCAC TGATTCGTGG TGGCCACTTC TCATCTGCTT CTGGAAAAGG
  R
  CAGAGAGGTT TCCCTGCCTT GAAAGCTGTT TAACATTGGA GTCTACCATT GGGTTTCAAT
  ATGAGACCAG TGATTGTAAT TTTAGCGCCT CAGCAAGAAC TCATTTTCAG TTTCTCTTCA
  ACTTTTGCTC TGCCTCAAGA TCAGAAGCTT TCCTGGTTTT GTCTATTTTA AGTTCCTCTT
  TTGTTGCAGT TGTAGACACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320269124	CHEV_2_43594065	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs234217566					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:43628557 () rs orientation: forward

Symbol	Name	Function Class
Rr556296	regulatory region 556296	324 bp distal
Rr556297	regulatory region 556297	within coordinates
Tssr17595	transcription start site region 17595	979 bp upstream
Tssr23873	transcription start site region 23873	130 bp downstream
Tssr23874	transcription start site region 23874	471 bp downstream