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rs234226280 SNP Detail
Summary
  • ID
    rs234226280
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr6:49022957 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TGTGGGAAAT TTGGAAACAG
AAGAGCATAA ACAAAATATA AAAATCATTC ACAAACAACA TCAGATGTGA TTGCTATTGA
ATAATGACAT TTTAAGTATT AATATTTCTT GTTTAAGATA ATAATGGATA CACATTTTTA
TTTTGTTATC ATAGCATTTG TCTATATTAT TTAAAAGTCC TTAAGTTGTT TTAATGACTG
Y
ATAATACATC AATGTGTGGA TCTAAAACAA CATAGATACT GTTCTTCTCT GTCATGGTCT
ACATGTCTGT TTTCTAAAAA CCATAAAAGG TTTCACTTTG ATGTATTATT AGTGAAGTGT
TATTTTAAGA GGAACAAAAT TGGCTCATTA TTAACAAGGC TGCTGAATTC TCAGTATATT
ACCAGAGGGC CACGTCAATG                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss368235188 MGP_WTSI_6_48996022 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C T C C C C C C C C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs234226280 SNP C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C T C C C C C C C C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss368235188 MGP_WTSI_6_48996022 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr6:49022957 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
D6Dcr8 DNA Segment, Chr 6, Derry C. Roopenian 8 326 bp proximal
D6Mit142 DNA segment, Chr 6, Massachusetts Institute of Technology 142 216 bp proximal
Gm56981 predicted gene, 56981 within coordinates
Gpnmb glycoprotein (transmembrane) nmb within coordinates
Tssr56317 transcription start site region 56317 1966 bp downstream
Tssr56318 transcription start site region 56318 1910 bp downstream
Tssr56319 transcription start site region 56319 706 bp downstream
Tssr56320 transcription start site region 56320 666 bp downstream
Tssr56321 transcription start site region 56321 652 bp downstream
Tssr56322 transcription start site region 56322 634 bp downstream
Tssr56323 transcription start site region 56323 598 bp downstream
Tssr56324 transcription start site region 56324 568 bp downstream
Tssr56325 transcription start site region 56325 412 bp downstream
Tssr56326 transcription start site region 56326 397 bp downstream
Tssr56327 transcription start site region 56327 343 bp downstream
Tssr56328 transcription start site region 56328 265 bp downstream
Tssr56329 transcription start site region 56329 189 bp downstream
Tssr56330 transcription start site region 56330 18 bp downstream
Tssr56331 transcription start site region 56331 16 bp upstream
Tssr56332 transcription start site region 56332 85 bp upstream
Tssr56333 transcription start site region 56333 127 bp upstream
Tssr56334 transcription start site region 56334 144 bp upstream
Tssr56335 transcription start site region 56335 154 bp upstream
Tssr56336 transcription start site region 56336 184 bp upstream
Tssr56337 transcription start site region 56337 199 bp upstream
Tssr56338 transcription start site region 56338 222 bp upstream
Tssr56339 transcription start site region 56339 235 bp upstream
Tssr56340 transcription start site region 56340 427 bp upstream
Tssr56341 transcription start site region 56341 687 bp upstream
Tssr56342 transcription start site region 56342 719 bp upstream
Tssr56343 transcription start site region 56343 1269 bp upstream
Tssr56344 transcription start site region 56344 1283 bp upstream
Tssr56345 transcription start site region 56345 1301 bp upstream
Tssr56346 transcription start site region 56346 1338 bp upstream
Tssr56347 transcription start site region 56347 1376 bp upstream
Tssr56348 transcription start site region 56348 1402 bp upstream
Tssr56349 transcription start site region 56349 1725 bp upstream
Tssr56350 transcription start site region 56350 1752 bp upstream
Tssr56351 transcription start site region 56351 1782 bp upstream
Tssr56352 transcription start site region 56352 1795 bp upstream
Tssr56353 transcription start site region 56353 1864 bp upstream
Tssr56354 transcription start site region 56354 1879 bp upstream
Tssr56355 transcription start site region 56355 1904 bp upstream
Tssr56356 transcription start site region 56356 1922 bp upstream
Tssr56357 transcription start site region 56357 1934 bp upstream
Tssr56358 transcription start site region 56358 1952 bp upstream
Tssr56359 transcription start site region 56359 1967 bp upstream
Tssr60845 transcription start site region 60845 1874 bp upstream
Tssr60846 transcription start site region 60846 631 bp upstream
Tssr60847 transcription start site region 60847 548 bp upstream
Tssr60848 transcription start site region 60848 312 bp downstream
Tssr60849 transcription start site region 60849 1306 bp downstream
Tssr60850 transcription start site region 60850 1361 bp downstream
Tssr60851 transcription start site region 60851 1831 bp downstream
Tssr60852 transcription start site region 60852 1874 bp downstream
Tssr60853 transcription start site region 60853 1884 bp downstream
Tssr60854 transcription start site region 60854 1903 bp downstream
Tssr60855 transcription start site region 60855 1936 bp downstream
Tssr60856 transcription start site region 60856 1974 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory