rs234234674 SNP Detail

Summary

• ID
  rs234234674
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:80156968 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGAGACCCT GTCTCAAAAG
  AGCAGTGGGA AAGCCGGGCA GTGGTGGCGC ACGCCTTTAA TCCCAGCACT CGGGAGGCAG
  AGGCAGGTAG ATTTTTGAGG CCAGCCTGGT CTACAAAGTG AGTTCCAGGA CAGCCAGGGC
  TAAACAGAGA AATCCTGTCT CGAAAAACCA AAAAAAAAAA AAAAAAAAAA AAAAAACCAG
  T
  GGGGGATGGG GGAGCGAGCT AGCTTCCTGT TCATGGCTGT ATGGTAATTC AGCACTTGGC
  AGATCTGGGC TCAGAGCAGT CTTCCTCTGT GGGTCCTTAT TCCTCCAGGG GCCCACCCTA
  CCCTCAAGGA CACCATAAAC TCGACATCTT CTGTTTAACT TTTATTTGGC AACTATGAGG
  TTAGACATGG GGCTATGGAT                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J
ss381017643	MGP_WTSI_10_79783879	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J
rs234234674					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss381017643	MGP_WTSI_10_79783879	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:80156968 () rs orientation: forward

Symbol	Name	Function Class
2310011J03Rik	RIKEN cDNA 2310011J03 gene	597 bp upstream
Cpgi1870	CpG island 1870	313 bp distal
Cpgi1871	CpG island 1871	1646 bp proximal
Pcsk4	proprotein convertase subtilisin/kexin type 4	149 bp downstream
Rr402045	regulatory region 402045	358 bp downstream
Rr435191	regulatory region 435191	107 bp distal
Rr435192	regulatory region 435192	1717 bp proximal
Tssr98420	transcription start site region 98420	581 bp upstream
Tssr98421	transcription start site region 98421	574 bp upstream
Tssr98422	transcription start site region 98422	1902 bp downstream
Tssr98423	transcription start site region 98423	1930 bp downstream
Tssr98424	transcription start site region 98424	1987 bp downstream