rs234238783 SNP Detail

Summary

• ID
  rs234238783
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:103059569 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGTGCCTGC TCACCAGCCT
  AACCTTTTCC TTTCTTCTCT TGCAGTATCG AGGCTTGAAC CCAGGGCTCT GTGCATGCTG
  TGCACTTTGC ACTTGACCAC AGAGCCACAT CCATAGCTTG CCTTTCTCCT TAAAGAGACA
  TCTACTGACT ACTGATACAT GCTCAGTCAC CTGAGTTAGG AGTGTTCCCA ATGGCTGCAC
  R
  TTCCTTCCAT TAAAGATGAC AAAGTGACAA TGGTCTGGAA ATGTCACCCT GGCTGTGTGA
  CTGTATCGAT CACCACAGCC ATCAGTCCGT CCTGCCTGTC ATACCACCTG CACACGGAAG
  GGGGCAACGC AGACTTACGG AAAGGAAACA TTGTTCCTAA ACTTGACAAC CAAGCTTTGC
  TGGTAGAATT TTCTCCATTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384517770	MGP_WTSI_11_103030057	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	G	A	A	A	A	G	A	A	A	A	G	A	G	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs234238783					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	G	A	A	A	A	G	A	A	A	A	G	A	G	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384517770	MGP_WTSI_11_103030057	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:103059569 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3957	CpG island 3957	1804 bp proximal
Gm51919	predicted gene, 51919	within coordinates
Rr403012	regulatory region 403012	51 bp upstream
Rr457534	regulatory region 457534	1465 bp distal
Rr457535	regulatory region 457535	1321 bp distal
Rr457536	regulatory region 457536	378 bp distal
Rr457537	regulatory region 457537	within coordinates
Rr457538	regulatory region 457538	1410 bp proximal
Rr457539	regulatory region 457539	1520 bp proximal
Tssr105316	transcription start site region 105316	1673 bp upstream
Tssr105317	transcription start site region 105317	1750 bp upstream
Tssr105318	transcription start site region 105318	1984 bp upstream