rs234241773 SNP Detail

Summary

• ID
  rs234241773
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:83531632 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGGCGCAGG CCGAGTTCCT
  CAGCCTCTCC CTGTGGTCCG ACATCTTGGC GCTCCCATCT GGGTGCTGCG CCAGATCCCT
  GAGGCACTGG GTCAAGAGCA CGCAGGCCGA CACCACACTC ATGGCACCTC CCAGGATGGC
  GGTCTGCACC GCCTTGCCCT CAGTGCTCAC GGCAGCTGCG CGACCCAGGA ATTGAGGCTC
  R
  GTGGCAAAGC CCACCAAAGC GCTCACCGCC TGCACCAAGG GCCCACTGAA GAGCGCGCAA
  CGACTGCGGG CCAGCTCGCT GGGTGCCGCC TTCACTTCGC GTACGCATGC TAACAGCGCG
  GATGCACTTG TGCTCATGCA CTTGACGCCC AGCTTGAACT GTTCGCGAGA GAAGCGGTCC
  CGTGACTTGT CACTGGCCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss372126291	MGP_WTSI_7_91030934	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs234241773					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss372126291	MGP_WTSI_7_91030934	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:83531632 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19376	CpG island 19376	within coordinates
Mesd	mesoderm development LRP chaperone	1442 bp upstream
Rr400419	regulatory region 400419	1852 bp upstream
Rr650493	regulatory region 650493	1336 bp proximal
Rr650494	regulatory region 650494	1799 bp proximal
Rr650495	regulatory region 650495	1871 bp proximal
Tlnrd1	talin rod domain containing 1	within coordinates
Tssr2320	transcription start site region 2320	204 bp downstream
Tssr67581	transcription start site region 67581	1198 bp upstream
Tssr67582	transcription start site region 67582	1223 bp upstream
Tssr67583	transcription start site region 67583	1300 bp upstream
Tssr67584	transcription start site region 67584	1433 bp upstream
Tssr73402	transcription start site region 73402	1030 bp downstream
Tssr73403	transcription start site region 73403	1093 bp downstream
Tssr73404	transcription start site region 73404	1374 bp downstream
Tssr73405	transcription start site region 73405	1730 bp downstream
Tssr73406	transcription start site region 73406	1789 bp downstream
Tssr73407	transcription start site region 73407	1838 bp downstream
Tssr73408	transcription start site region 73408	1865 bp downstream
Tssr73409	transcription start site region 73409	1900 bp downstream