rs234246186 SNP Detail

Summary

• ID
  rs234246186
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:131567513 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    tatgtacat taattatata taatatctta
  attatatatt atatacacat attatacatt atatattata tgtgcactag tatatacatt
  gtatataata tacaatatat tctatttatt tatatataat atatttttac attatatact
  M
  tatatatata tatatatata tatatatata taagatttat gttgtttctt tcaagaaaca
  taaggaaaaa atgttagact caaaacagaa aatgaaaaat ctgtctgggg aaagaagtga
  aataaaacta tttgaattat tgactaaatg                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319974775	CHEV_1_133536352	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs234246186					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:131567513 () rs orientation: forward

Symbol	Name	Function Class
Ctse	cathepsin E	within coordinates
Rr28482	regulatory region 28482	112 bp distal
Rr366988	regulatory region 366988	1378 bp downstream
Tssr8635	transcription start site region 8635	1479 bp downstream
Tssr8636	transcription start site region 8636	1437 bp downstream
Tssr8637	transcription start site region 8637	1412 bp downstream
Tssr8638	transcription start site region 8638	1371 bp downstream
Tssr8639	transcription start site region 8639	1291 bp downstream
Tssr8640	transcription start site region 8640	1279 bp downstream