rs234249368 SNP Detail

Summary

• ID
  rs234249368
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:40554526 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGTAAAAG TGATGCTGGA
  GAGAGAGAGT TCATCAGAAG AAAGCCTTTA GGTTTGAAAT GAAAGGCAAG GTTGGCAGTG
  CTTGTTTTAG AAGAAGGGGG AGGAGGAAGA GGAGGAGGAG GAAGTAAAAA AGAACTCCCC
  TGTTGAGAAA CCGTGTCGAA TGTTAACATT TGGTACAGGA AATTCCTGTA AAGGAAGCAG
  R
  CTTACTCACC ATTTCAACTA AACCTAACCA CAACCCCTTT CTTGTCAAGG AGGCTGGCCA
  GAGGACAGCT TTGAATGCTT TATTTCAGGA GTTTTCTTCC GTGGATAAAG GTAGTTTACT
  TCATTTCTCC TTTGTTATGA CTGGGCATTT TCCAACACCA GAGGTCCTTT ACAAAATTCC
  AAGGTTGTCC TTTTCTGTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss349352561	MGP_WTSI_1_40572211	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs234249368					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss349352561	MGP_WTSI_1_40572211	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:40554526 () rs orientation: forward

Symbol	Name	Function Class
Il18rap	interleukin 18 receptor accessory protein	22 bp upstream
Rr410075	regulatory region 410075	within coordinates
Rr410076	regulatory region 410076	7 bp proximal
Tssr65	transcription start site region 65	129 bp upstream
Tssr6477	transcription start site region 6477	11 bp upstream
Tssr6478	transcription start site region 6478	76 bp upstream
Tssr6479	transcription start site region 6479	105 bp upstream
Tssr11438	transcription start site region 11438	136 bp upstream
Tssr11439	transcription start site region 11439	1081 bp downstream
Tssr11440	transcription start site region 11440	1091 bp downstream
Tssr11441	transcription start site region 11441	1109 bp downstream
Tssr11442	transcription start site region 11442	1125 bp downstream
Tssr11443	transcription start site region 11443	1156 bp downstream