rs234253412 SNP Detail

Summary

• ID
  rs234253412
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:110359870 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGGTACTT GTCTAGTGTT
  TAGGAAGCCT TGGGTTCAAT CTCCAGCACC ATATAAACCA GCTCTGGTGC TGTCTCCCTT
  CCTGTAACCT CTCTACTATG TGGTCGATGC AGGAGGAGGA GAGATGTTCA AGGTCATCTT
  TGGCCAACTT ACTGAGGTCA AGGCCAGATG GGATACACAA AACCCTGTCT CAAAAAGAAT
  Y
  AAAAAGAGGA AGTTCGGGGT TTCACAAGTC CCTCCTTTTA TCCTCACAGC AGTGAGAGAA
  TCTGTTCACA ACAAAACTTT CATCTTCAGC AGGTTGTGGT GTCTGGCACC TGTAATCCAG
  GCATCAGGGA AGCTGGGGTA AGGATTTTGA GTTTGAGGTC AGTATAGCAC ATAGCAAGTT
  TCAGCCACAA AGGAAAGCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378905076	MGP_WTSI_9_110433306	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs234253412					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378905076	MGP_WTSI_9_110433306	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:110359870 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22381	CpG island 22381	1032 bp proximal
Gm69936	predicted gene, 69936	781 bp downstream
Rr687127	regulatory region 687127	1598 bp distal
Rr687128	regulatory region 687128	1311 bp distal
Rr687129	regulatory region 687129	within coordinates
Rr687130	regulatory region 687130	437 bp proximal
Rr687131	regulatory region 687131	1544 bp proximal
Rr687132	regulatory region 687132	1545 bp proximal
Rr687133	regulatory region 687133	1806 bp proximal
Setd2	SET domain containing 2	1498 bp upstream
Tssr3032	transcription start site region 3032	1573 bp downstream
Tssr3033	transcription start site region 3033	1891 bp upstream
Tssr87389	transcription start site region 87389	1598 bp downstream
Tssr87390	transcription start site region 87390	1560 bp downstream
Tssr87391	transcription start site region 87391	1636 bp upstream
Tssr87392	transcription start site region 87392	1699 bp upstream
Tssr87393	transcription start site region 87393	1805 bp upstream
Tssr87394	transcription start site region 87394	1840 bp upstream
Tssr91630	transcription start site region 91630	1548 bp downstream
Tssr91631	transcription start site region 91631	1973 bp downstream
Tssr91632	transcription start site region 91632	1978 bp downstream