rs234253870 SNP Detail

Summary

• ID
  rs234253870
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:83532010 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCGTGACT TGTCACTGGC
  CAGGGCGCAC GCATCCGTCA GGAACTTGAG GTTTCGAGAC AGGCCCTGCG ACACCTCCAG
  CAACAGCTGT GGGGTCATGT CCGCCAGTGG GGTGGCTCGC AGCACAGCAC AGCCTTGTTC
  TACCTCGTGG CGGCAGCGTG TCACACGGTA GCGGTCCACA AGGCCTGGCT GTGCAGGTTG
  R
  GCGCCCGGTG TGGCCACGGC TGCCAGGTAG GCCGCATGTG CAGAACACTC GGTCAGCGAC
  ACCACCAAGT CGCCCAGTTC CACAAGACTG TCTCCCGCCT CTCCGAAGCG GCCCATGTTG
  AGCTGGCTCT GCACGTCGTG GGTGAGGATG GACAGCCCCT TAGTGCGCGC GATGATGGTG
  TCCCGGCACT GCTCGAAGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss372126297	MGP_WTSI_7_91031312	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs234253870					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss372126297	MGP_WTSI_7_91031312	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:83532010 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19376	CpG island 19376	within coordinates
Mesd	mesoderm development LRP chaperone	1064 bp upstream
Rr400419	regulatory region 400419	1474 bp upstream
Tlnrd1	talin rod domain containing 1	within coordinates
Tssr2320	transcription start site region 2320	582 bp downstream
Tssr67581	transcription start site region 67581	820 bp upstream
Tssr67582	transcription start site region 67582	845 bp upstream
Tssr67583	transcription start site region 67583	922 bp upstream
Tssr67584	transcription start site region 67584	1055 bp upstream
Tssr73402	transcription start site region 73402	652 bp downstream
Tssr73403	transcription start site region 73403	715 bp downstream
Tssr73404	transcription start site region 73404	996 bp downstream
Tssr73405	transcription start site region 73405	1352 bp downstream
Tssr73406	transcription start site region 73406	1411 bp downstream
Tssr73407	transcription start site region 73407	1460 bp downstream
Tssr73408	transcription start site region 73408	1487 bp downstream
Tssr73409	transcription start site region 73409	1522 bp downstream