rs234254106 SNP Detail

Summary

• ID
  rs234254106
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:3074240 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCAAGCGCC GCTGGCCCGG
  GGACCACAGA TTGGAAGCAG GCAGTCACTG GTCGTGGACA GGAAGACTCT CTCCGGCCAT
  CTCAGGTCAG TGCAGGCTCG GGCATGCCCC TGCCTCAGCC CCGAGGCATG CTGGGAGTTG
  TAGTTCTGTC CTGGCTTTGG TTCCTCTGAG CCCCGCCCCC CATTTTTTTC TTTTTTGTTC
  Y
  TTTTTTTCCG AGACTGGGTT GTTATTTTTT TCTAATTATT TTTATTTTTA ATAAATTTTG
  AATGTTTAAT ATTCCTCTAT CTATCTATCT ATCCATCTAT CTATCTATTC ATTTTTTATT
  GAAGTTAGTT TTGGTTTTTC CCAGACTTGG TGTCTCCCGG CTTAACCCTG AGACGGTTGC
  CCTGGCGTGC CACCCGGTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss382236873	MGP_WTSI_11_3024243	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	T	C	C	C	C	C	C	C	C	T	T	C	C	T	C	C	C	C	C	C	T	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs234254106					SNP	C	C	C	C	C	T	C	C	C	C	C	C	C	C	T	T	C	C	T	C	C	C	C	C	C	T	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382236873	MGP_WTSI_11_3024243	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:3074240 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2431	CpG island 2431	104 bp distal
Gm74511	predicted gene, 74511	within coordinates
Pisd-ps1	phosphatidylserine decarboxylase, pseudogene 1	1766 bp upstream
Rr369110	regulatory region 369110	232 bp downstream
Rr441449	regulatory region 441449	1496 bp distal
Rr441450	regulatory region 441450	209 bp distal
Rr441451	regulatory region 441451	893 bp distal
Rr441452	regulatory region 441452	734 bp distal
Rr441453	regulatory region 441453	within coordinates
Rr441454	regulatory region 441454	184 bp proximal
Rr441455	regulatory region 441455	407 bp proximal
Rr441456	regulatory region 441456	1223 bp proximal
Tssr100004	transcription start site region 100004	209 bp downstream
Tssr100005	transcription start site region 100005	186 bp downstream
Tssr106442	transcription start site region 106442	320 bp upstream