rs234257205 SNP Detail

Summary

• ID
  rs234257205
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:30306268 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGCACCAAG ATGGCCGCTG
  CCTCGGTCGG CGCGGCCGCC GCGAGACGGC CGTTGGTGGG CATGCTCCCT GAGTGCCTCG
  CACCGGCATG GCTGCCGCCT TCGCGCGAGT GACTGTAATT CTCGGCTTCC GGTCCTAGCC
  AGTCAGCGCT CATTTCCCTG CTGGAAGCTT GGCGGAGCCG GGGAGAGCTG CGGGGTGAAC
  M
  TTGAGAGGGA CCGGCGAGCA TCCGCTCCGG CTCCTCACGG AGAAGATGGC CGAGGGCGAG
  CGGCAGCCGC CGCCAGGTAG GGCGGTTGGA GGGCCCGGGC GTGCGGGTGG GAAAGGGGTG
  TGGCTCGGGG GGTCTCCCGA GTCTGAGGAG CTCTGGGGAC GGAGGAGGCA GGGCTGACGG
  CCTGGGCTGC AGGCGGGTGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss353515408	MGP_WTSI_2_30271776	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs234257205					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353515408	MGP_WTSI_2_30271776	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:30306268 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11436	CpG island 11436	within coordinates
Crat	carnitine acetyltransferase	666 bp upstream
Gm16323	predicted gene 16323	918 bp downstream
Ptpa	protein phosphatase 2 protein activator	mRNA-UTR
Rr554311	regulatory region 554311	1868 bp distal
Rr554312	regulatory region 554312	743 bp distal
Rr554313	regulatory region 554313	104 bp distal
Rr554314	regulatory region 554314	within coordinates
Tssr17115	transcription start site region 17115	573 bp downstream
Tssr17116	transcription start site region 17116	179 bp downstream
Tssr17117	transcription start site region 17117	166 bp downstream
Tssr17118	transcription start site region 17118	109 bp downstream
Tssr17119	transcription start site region 17119	35 bp downstream
Tssr23371	transcription start site region 23371	888 bp upstream
Tssr23372	transcription start site region 23372	846 bp upstream
Tssr23373	transcription start site region 23373	827 bp upstream
Tssr23374	transcription start site region 23374	807 bp upstream
Tssr23375	transcription start site region 23375	751 bp upstream
Tssr23376	transcription start site region 23376	696 bp upstream
Tssr23377	transcription start site region 23377	644 bp upstream
Tssr23378	transcription start site region 23378	632 bp upstream
Tssr23379	transcription start site region 23379	548 bp upstream
Tssr23380	transcription start site region 23380	482 bp upstream
Tssr23381	transcription start site region 23381	211 bp upstream