About   Help   FAQ
rs234257933 SNP Detail
Summary
  • ID
    rs234257933
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr16:49675601 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TTGATTGCCC AACCCTGCTT
GGGGGATGAA AACATTAGCC AACAAAGAAA GAAAAACAGA TAAGGAGGTC CACTTCTGGA
ACAAGTCAGA CCGGGGAGAG ATCAGGGCCA GGGGGAGCCA GAGGGAAGGA GTTCCTCGGG
GGCCAGGACC TGGTCACAGC GCCCTCTCTC CGCCCAGCCC TGCGGCTCCA GGGCTGCGCG
Y
CTTGGGAGGG AAGATGGTGA AAGCAGAAGC AGCGCCTACA CCGGGAGAGC AGGGAGGAGG
AGTTGGACTG AGGTTGGGCG GCTCCGAGGT CCAGGGCGAG CTTGGCCAGA GGGAGTAGAG
AGCAGCGGGG CTGCGCAGGG ACGCGTGCCG TGAGTTCCGG TGAGCGTGTG TGTCCCATGC
TCCCGTCTTT CAGGCCGGCC                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss396238736 MGP_WTSI_16_49855351 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C T C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs234257933 SNP C C C C C C C C C C C C C C C C C C C T C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss396238736 MGP_WTSI_16_49855351 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr16:49675601 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Cd47 CD47 antigen (Rh-related antigen, integrin-associated signal transducer) within coordinates
Cpgi8307 CpG island 8307 within coordinates
Gm4633 predicted gene 4633 192 bp upstream
Gm56621 predicted gene, 56621 within coordinates
Gm60685 predicted gene, 60685 999 bp upstream
Rr370104 regulatory region 370104 806 bp upstream
Rr516740 regulatory region 516740 1789 bp distal
Rr516741 regulatory region 516741 730 bp distal
Rr516742 regulatory region 516742 within coordinates
Rr516743 regulatory region 516743 139 bp proximal
Rr516744 regulatory region 516744 253 bp proximal
Rr516745 regulatory region 516745 923 bp proximal
Tssr4899 transcription start site region 4899 122 bp downstream
Tssr4900 transcription start site region 4900 22 bp upstream
Tssr4901 transcription start site region 4901 132 bp upstream
Tssr4902 transcription start site region 4902 247 bp upstream
Tssr4903 transcription start site region 4903 529 bp upstream
Tssr138724 transcription start site region 138724 879 bp downstream
Tssr138725 transcription start site region 138725 694 bp downstream
Tssr138726 transcription start site region 138726 138 bp downstream
Tssr138727 transcription start site region 138727 108 bp downstream
Tssr138728 transcription start site region 138728 111 bp upstream
Tssr138729 transcription start site region 138729 386 bp upstream
Tssr138730 transcription start site region 138730 507 bp upstream
Tssr138731 transcription start site region 138731 834 bp upstream
Tssr138732 transcription start site region 138732 980 bp upstream
Tssr138733 transcription start site region 138733 1068 bp upstream
Tssr138734 transcription start site region 138734 1320 bp upstream
Tssr138735 transcription start site region 138735 1358 bp upstream
Tssr141348 transcription start site region 141348 59 bp downstream
Tssr141349 transcription start site region 141349 279 bp downstream
Tssr141350 transcription start site region 141350 594 bp downstream
Tssr141351 transcription start site region 141351 878 bp downstream
Tssr141352 transcription start site region 141352 1109 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory