rs234276017 SNP Detail

Summary

• ID
  rs234276017
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:127923687 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTGGAAGA GCAGTCAGTG
  CTCTTACCCT CTGAGCCATC TCTCCAGCCC CCGAAACCCT GTCTTAAAGA AAGAAAAAGA
  AAAAGAAAAA AAGCCATACT TTTTGGGATT GTATTCCCAG TTGGAGAGGA TCAGTCCGAC
  TCCTCGGGTA CATTCTGCAG GCTCAGTCGT GCATATGATA CACAATGAAA ATATTGTTGT
  R
  TGGTTTTTGA CATTAGATCT ACTTGTGTAG CTTCAGCTGG CCTGGTACTC ACTTTCTGTT
  CAGCTCTGTT TGGCAGCTCA TAGCAGTCCT CCTGCCTCAG TGTCCTAAGA GTTGGGATTA
  TAGACAGGAG CTGCTACATC TAGCTTTCAT TGTTATCTTG ATTGTGTGCT GTGTATTCCG
  AGGCACATAA TAAGCAAGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323531647	CHEV_10_127524874	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs234276017					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:127923687 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Atp5f1b	ATP synthase F1 subunit beta			Intron
				Noncoding-Transcript-Variant
Rr441098	regulatory region 441098			1129 bp distal
Rr441099	regulatory region 441099			1228 bp distal
Tssr96323	transcription start site region 96323			1721 bp downstream
Tssr96324	transcription start site region 96324			1651 bp downstream
Tssr96325	transcription start site region 96325			1512 bp downstream
Tssr96326	transcription start site region 96326			1496 bp downstream
Tssr96327	transcription start site region 96327			1469 bp downstream
Tssr96328	transcription start site region 96328			1429 bp downstream
Tssr96329	transcription start site region 96329			495 bp upstream
Tssr96330	transcription start site region 96330			555 bp upstream