rs234282641 SNP Detail

Summary

• ID
  rs234282641
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:65755267 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTGGGGGA GAGGACAGGG
  CAAGAGGCGT ATGTTTCCCA TCTTGGTCCA TCATTGAAAA ATGTCAGGGC CAAGAGCTCA
  AGGCAGGAAC TTGGAAGCAG GAGCCAGAAC AAAACACTGC TTGCTCCCTA TGGCTTGCTC
  AGCTTGCCTT TTTAAAAGAC AACCTAGGAC CATGTGACCC AGGGATGTCA CCATCTACAA
  W
  GTGCTAGACC CTCCCATTCC AATCTTTAAT CCAGAAAAAT GATCCACAGA CTTCCTACAG
  AGCAATCTGA TGGGGACATT TTCTCAATTT AAATTCCAGC TTCCCAGAGG GCTCAAGCTT
  GTGTCAAGTT AACAAAAAAA ACCTAACCAG GATAACTGGT CTATTAAGGA CTGGTAACCC
  AGTCTTGTTG AATGGAATGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321809796	CHEV_6_65728277	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs234282641					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:65755267 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17503	CpG island 17503	358 bp proximal
Gm16838	predicted gene, 16838	within coordinates
Prdm5	PR domain containing 5	705 bp upstream
Tssr56854	transcription start site region 56854	711 bp upstream
Tssr61222	transcription start site region 61222	1353 bp downstream
Tssr61223	transcription start site region 61223	1406 bp downstream
Tssr61224	transcription start site region 61224	1414 bp downstream
Tssr61225	transcription start site region 61225	1431 bp downstream
Tssr61226	transcription start site region 61226	1490 bp downstream