rs234284277 SNP Detail

Summary

• ID
  rs234284277
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:102488458 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GAGCCCTGG GTGGGTGAAG GAGATGCGTC
  TCCAGCCCTT GGCCCTGGCg tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg
  tgtgtgagag agagagagag agagagagag agagagagag agagagagag agagggagag
  R
  gagagagaga AATTATGGCA TCCCTCACAC CCTGCTCGCC CTCGGGGAAC CACATTAATA
  TTAATCTAGA CGAATGATTG AATGTCCGGG ATTTATTCGG GCCCGGGTAA AGAAGGACCC
  GCAGCTGGGT CGCGTTTCCT TCCGGTCACC                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320439892	CHEV_2_102498270	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs234284277					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102488458 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11978	CpG island 11978	481 bp proximal
Gm57687	predicted gene, 57687	1587 bp upstream
Rr561712	regulatory region 561712	1448 bp distal
Rr561713	regulatory region 561713	56 bp proximal
Rr561714	regulatory region 561714	678 bp proximal
Rr561715	regulatory region 561715	678 bp proximal
Rr561716	regulatory region 561716	1179 bp proximal
Slc1a2	solute carrier family 1 (glial high affinity glutamate transporter), member 2	546 bp upstream
Tssr19098	transcription start site region 19098	115 bp upstream
Tssr19099	transcription start site region 19099	167 bp upstream
Tssr19100	transcription start site region 19100	463 bp upstream
Tssr19101	transcription start site region 19101	527 bp upstream
Tssr19102	transcription start site region 19102	564 bp upstream
Tssr19103	transcription start site region 19103	613 bp upstream
Tssr19104	transcription start site region 19104	639 bp upstream
Tssr19105	transcription start site region 19105	705 bp upstream
Tssr19106	transcription start site region 19106	730 bp upstream
Tssr19107	transcription start site region 19107	741 bp upstream
Tssr19108	transcription start site region 19108	784 bp upstream
Tssr19109	transcription start site region 19109	820 bp upstream
Tssr19110	transcription start site region 19110	1100 bp upstream