rs234299791 SNP Detail

Summary

• ID
  rs234299791
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:119725901 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCAGGGACC ACGTGTTCAA
  ATGCATGAAC CTCTGAAGGA CATTTTCCAT TCAAACTATC AGGCTGTTCT AAGTCTCTGT
  GTTTGGGATG AATTTAGTTT TATACTTCTA AGTTTTTCTA GTCTCCCTTC TCTGTGAGGA
  AGCCATGTTC CTAGAAACAG TCTTTCAGAT GGGGGGGGGG GGGTCTCCTA GCTCTGACTG
  R
  GCAGAGTCTT CCTCCCGGTC ACTGAGAGCC ACATCTGATG AGCAGGAGTC AGGAACATGC
  TCACAGGAAA AACTTATAAA TGTTTTCTCT TCCTCTCTCC CTGCCACCTC ATTCATATAA
  TTTGATGCTT TGAGGGTCTC TTATGACTCA AGTATAGGTT ATAGTCTGCA GAAAACCAGT
  GAAGGGAAGG GACATGTTAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384932127	MGP_WTSI_11_119696389	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs234299791					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384932127	MGP_WTSI_11_119696389	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:119725901 () rs orientation: forward

Symbol	Name	Function Class
Rptor	regulatory associated protein of MTOR, complex 1	within coordinates
Rptoros	regulatory associated protein of MTOR, complex 1, opposite strand	710 bp upstream
Rr239372	regulatory region 239372	1500 bp proximal
Rr246287	regulatory region 246287	700 bp distal
Rr369474	regulatory region 369474	within coordinates
Tssr106251	transcription start site region 106251	503 bp upstream
Tssr112235	transcription start site region 112235	715 bp upstream
Tssr112236	transcription start site region 112236	654 bp upstream
Tssr112237	transcription start site region 112237	587 bp upstream
Tssr112238	transcription start site region 112238	1836 bp downstream