rs234303405 SNP Detail

Summary

• ID
  rs234303405
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129273431 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATAATGAG ATCTGACGCC
  CTCTTCTAGT GTGTCTGAAG ACAACTACAG TGTACTTACA TATAATAAAT AAATCTTTTT
  TTAAAAAAAG AAAGAAAATC ATTAGGACAC CAGGTGTTGT GGCACATGCA TGTAATGCCA
  GAACTCAGGA GGCTCTGAGT TCGAGACCAC CCTGGTCTAC ATAGTTCCAG GACAGGCAGA
  R
  CTACATAGGA GACCCTGTCT GGGGGACACA CACACACACA GAGAGCAGGC AGGTCTCTCT
  GTGCTGTTCT CTTTCAGCCA GGATTAAGCT CAAAACAACT AAGCCAACCA GGAGGATCCC
  TTTCCCGGTG GAGGCCCGGT GTGCAGGAGC CTTTTGCCTA CACAGTTGTC TAAAGGGAAG
  TTGGAAACAA TTCTTTAGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321312508	CHEV_4_129056882	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs234303405					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129273431 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14890	CpG island 14890	1559 bp distal
Gm12980	predicted gene 12980	206 bp upstream
Rr377177	regulatory region 377177	176 bp upstream
Rr600215	regulatory region 600215	1533 bp distal
Rr600217	regulatory region 600217	1266 bp distal
Tssr39145	transcription start site region 39145	1777 bp upstream
Tssr43497	transcription start site region 43497	1800 bp upstream
Tssr43498	transcription start site region 43498	1714 bp upstream
Tssr43499	transcription start site region 43499	1688 bp upstream
Tssr43500	transcription start site region 43500	632 bp upstream
Zbtb8a	zinc finger and BTB domain containing 8a	1610 bp upstream