rs234304370 SNP Detail

Summary

• ID
  rs234304370
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:152779596 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GAAGGCCGG CGGCGAGTGG GTGGGAACGA
  GAAAGCGAGG GCGATGCTGC GAAGTCAGAG GAAAGGGAAG GGGCTTCCCC ACCACTGTTT
  GAGGCTGGGC AGCGGGATCC CGCCAGAAGC GGGTCCCTAA GGGAAGAGAC GGGCACATGA
  Y
  AACCGAGATG CGGCTCCGGC GATCGCGAAT GTTCGACTTT TTGTAGCCGG TCGACCCTTG
  CCTAATTCCT ACTCGATATC ACCGGCGAGA CCTCCCGTAG GCGACTTAGT GAGAGCTCGA
  ACCCAGCCTA GGAGGCTAAC ACGCAGTTCT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320068824	CHEV_1_154750975	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs234304370					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:152779596 () rs orientation: forward

Symbol	Name	Function Class
Cpgi860	CpG island 860	within coordinates
Cpgi861	CpG island 861	841 bp proximal
Gm70930	predicted gene, 70930	212 bp upstream
Rr396386	regulatory region 396386	1218 bp downstream
Rr396387	regulatory region 396387	412 bp downstream
Rr396388	regulatory region 396388	688 bp upstream
Rr420557	regulatory region 420557	1234 bp distal
Rr420558	regulatory region 420558	709 bp distal
Rr420559	regulatory region 420559	within coordinates
Rr420560	regulatory region 420560	223 bp proximal
Smg7	SMG7 nonsense mediated mRNA decay factor	1199 bp upstream
Tssr9437	transcription start site region 9437	972 bp downstream
Tssr9438	transcription start site region 9438	923 bp downstream
Tssr9439	transcription start site region 9439	31 bp downstream
Tssr14242	transcription start site region 14242	1176 bp upstream
Tssr14243	transcription start site region 14243	1095 bp upstream
Tssr14244	transcription start site region 14244	1066 bp upstream
Tssr14245	transcription start site region 14245	758 bp upstream
Tssr14246	transcription start site region 14246	727 bp upstream