rs234312239 SNP Detail

Summary

• ID
  rs234312239
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127484180 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCTTCCTT TCTTCTTCCC
  TTCTCTCTTC TTCCCTTCTC TCTTCTTCCC TTCTCTCTTC TTCCCTTCTC CCTTCCTTCC
  TTCCTTCTTT GTCTTTGTCT TCTTCTTTCT CCTTCTCCTC CTCCCCCTTC CTCCCTCCTT
  CCTCCCTCCC TCTCCCTCCT CCTTCTTCTC TAGACTATTT TTCATATTTT TGTTTGTTTG
  K
  TTTGATTTCT GTTGCTGTTG TTTTGAGTCA CGATTTTACT AAGTAGCCCT GGCTGGCCTG
  GATCTCTGCA TATATACCAG GCTGGCTTCA AACTCAGAGG TCTGTTTGTC TCTGCCTCCT
  GAGTGTTGAG ATGAAAGGTG TATATATCAC TATACCTGTG AAAGATTTAT TTCTAATTAT
  GTTGAATGTT TGTGTATGTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359644614	MGP_WTSI_3_127393449	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	T	T	G	T	T	G	T	T	T	T	T	T	T	G	G	T	G	T	T	T	T	T	T	T	G	T	T	T	T	G	T	T	T	G	T	T	T	T	G	T	G	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs234312239					SNP	G	G	T	T	G	T	T	G	T	T	T	T	T	T	T	G	G	T	G	T	T	T	T	T	T	T	G	T	T	T	T	G	T	T	T	G	T	T	T	T	G	T	G	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359644614	MGP_WTSI_3_127393449	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127484180 () rs orientation: forward

Symbol	Name	Function Class
Alpk1	alpha-kinase 1	within coordinates
Gm16238	predicted gene 16238	1404 bp downstream
Tssr35586	transcription start site region 35586	1979 bp upstream
Tssr35587	transcription start site region 35587	217 bp downstream
Tssr35588	transcription start site region 35588	760 bp downstream