rs234322649 SNP Detail

Summary

• ID
  rs234322649
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:9963294 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCAAGGCC TCAGACCCAA
  GAAGGTATCC CAGAAGACCG TGGCCAATGC CTGAAGTGAG GTGGGAAGAG CTCAGGTAAA
  GACAAGTGTT CATTTGCCAT CTAACAAATA GTGAGGCTGG CCCTTGAGCT ACACTAGCTA
  GAGTCTCAGT TCTGTCTCAA GGCTACCTGC AAGAGGCTAG CCAACCATCC CTGCAAGAAC
  M
  ACCTCATTAC TTCCCAAGAG ACATCATTTC AGCATTCTGT TAGTATTGCA CTTGCTAGAA
  GTTTGTTGCT CATATCAAGC CCTTAGGTGG AGTGAACAAA AGGCCTCTAT CACAGGGTTC
  TTTCCTAGGT AGTTGGCATT AACCCTCAGC TAGTGTAGGA ACACAAGTTT CCCCCACAGG
  TCAGTAGTAA TGAACTGGGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CBA/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J
ss401720092	MGP_WTSI_19_10060420	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	A	C	C	C	C	C	C	A	C	C	C	C	C	C	A	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CBA/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J
rs234322649					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	A	C	C	C	C	C	C	A	C	C	C	C	C	C	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401720092	MGP_WTSI_19_10060420	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:9963294 () rs orientation: forward

Symbol	Name	Function Class
Best1	bestrophin 1	within coordinates
Fth1	ferritin heavy polypeptide 1	832 bp downstream
Rr543966	regulatory region 543966	1928 bp distal
Rr543967	regulatory region 543967	1348 bp distal
Rr543968	regulatory region 543968	1367 bp proximal
Tssr155006	transcription start site region 155006	1711 bp downstream
Tssr155007	transcription start site region 155007	1638 bp downstream
Tssr155008	transcription start site region 155008	1347 bp downstream
Tssr155009	transcription start site region 155009	1001 bp downstream
Tssr155010	transcription start site region 155010	813 bp downstream
Tssr158137	transcription start site region 158137	1693 bp upstream
Tssr158138	transcription start site region 158138	1604 bp upstream
Tssr158139	transcription start site region 158139	1311 bp upstream
Tssr158140	transcription start site region 158140	1090 bp upstream
Tssr158141	transcription start site region 158141	1062 bp upstream
Tssr158142	transcription start site region 158142	1037 bp upstream
Tssr158143	transcription start site region 158143	971 bp upstream
Tssr158144	transcription start site region 158144	833 bp upstream