rs234327424 SNP Detail

Summary

• ID
  rs234327424
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:155118984 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGCCC TGCCCTGCCA GGTCCCGCCC
  Y
  TGGCTTACGA GTCCCCCGCC CACTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320572687	CHEV_2_155102800	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs234327424					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:155118984 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12515	CpG island 12515	within coordinates
Gm75512	predicted gene, 75512	795 bp upstream
Map1lc3a	microtubule-associated protein 1 light chain 3 alpha	within coordinates
Pigu	phosphatidylinositol glycan anchor biosynthesis, class U	1179 bp downstream
Rr568016	regulatory region 568016	818 bp distal
Rr568017	regulatory region 568017	757 bp distal
Tssr21073	transcription start site region 21073	714 bp downstream
Tssr21074	transcription start site region 21074	590 bp downstream
Tssr21075	transcription start site region 21075	570 bp downstream
Tssr21076	transcription start site region 21076	511 bp downstream
Tssr21077	transcription start site region 21077	472 bp downstream
Tssr21078	transcription start site region 21078	450 bp downstream
Tssr21079	transcription start site region 21079	444 bp downstream
Tssr21080	transcription start site region 21080	292 bp downstream
Tssr21081	transcription start site region 21081	149 bp downstream
Tssr21082	transcription start site region 21082	134 bp downstream
Tssr21083	transcription start site region 21083	109 bp downstream
Tssr21084	transcription start site region 21084	83 bp downstream
Tssr21085	transcription start site region 21085	16 bp upstream