rs234332111 SNP Detail

Summary

• ID
  rs234332111
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:142209155 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGGTGCCC CTGCCCCTCC
  CAGGCATGCC CCACCCATGT GTCCCCATCA CTGCCTTCTG TGAGCAGTGA GCCCATGCCC
  AGCCCCTTCC CCAACTGGGA AATCAAGAGA AGCATGAACA TTGAAAGCAG GCAAGCACCC
  CATGTTGTAG TCCTGGGAAC CCCTCAAGTT GGATGGCCAA GGTCCAGCTC TCCCCTTGTA
  S
  CCCCAAACTA CACGTGCACT CTCAACCTGG CTGAGACTTG ACATCCACAT TTGGTTTTGC
  TTTTATCAAC TTTAAAAACT TTTAAAACTA TCAGACTTGT GACTTTGAGA TTACGACCTT
  GCCCGGGGGG GGGGGGGAAG GGGTAGCTTA AGAGCAAGGC CAGACCAGTG TACTAATTGT
  CACCCCATCC AGGGAGGCTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373454575	MGP_WTSI_7_149841323	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs234332111					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373454575	MGP_WTSI_7_149841323	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:142209155 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19966	CpG island 19966	968 bp distal
Gm49394	predicted gene, 49394	within coordinates
Igf2	insulin-like growth factor 2	within coordinates
Mir483	microRNA 483	422 bp upstream
Rr167001	regulatory region 167001	within coordinates
Tssr2463	transcription start site region 2463	1565 bp upstream
Tssr70231	transcription start site region 70231	1853 bp downstream
Tssr70232	transcription start site region 70232	1800 bp downstream
Tssr70233	transcription start site region 70233	1757 bp downstream
Tssr70234	transcription start site region 70234	1719 bp downstream
Tssr70235	transcription start site region 70235	1696 bp downstream
Tssr70236	transcription start site region 70236	1674 bp downstream
Tssr70237	transcription start site region 70237	1573 bp downstream
Tssr70238	transcription start site region 70238	1543 bp downstream
Tssr70239	transcription start site region 70239	1413 bp downstream
Tssr70240	transcription start site region 70240	1065 bp downstream
Tssr75872	transcription start site region 75872	1731 bp upstream
Tssr75873	transcription start site region 75873	1719 bp upstream
Tssr75874	transcription start site region 75874	1509 bp upstream
Tssr75875	transcription start site region 75875	1472 bp upstream
Tssr75876	transcription start site region 75876	1424 bp upstream
Tssr75877	transcription start site region 75877	1365 bp upstream
Tssr75878	transcription start site region 75878	1083 bp upstream
Tssr75879	transcription start site region 75879	1042 bp upstream
Tssr75880	transcription start site region 75880	1011 bp upstream
Tssr75881	transcription start site region 75881	266 bp downstream
Tssr75882	transcription start site region 75882	307 bp downstream
Tssr75883	transcription start site region 75883	618 bp downstream
Tssr75884	transcription start site region 75884	656 bp downstream
Tssr75885	transcription start site region 75885	703 bp downstream
Tssr75886	transcription start site region 75886	761 bp downstream