rs234336283 SNP Detail

Summary

• ID
  rs234336283
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:35963879 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCTGGGGC TCTCCCTGCG
  GGGGACGCTT CCTTCCCAAT CATTGTAGCT TGCGGGCGCC GGGGGTCCTC ACCTCGCAGT
  GCTGGGCGGG TGCTGCGCCT GCGGGGGCGG CTGCTTGCAG GTCTGCGGCG CACACTCCCC
  GCATCAGACC CCACTCGCTG CCCTGTGTAT AGGGACGTTC ATAACTGCCC CGAGAGCCTC
  K
  GACCACGCGT GGCCTTGCCT CCCCTTAGAC TTGGAAGAGG CGGCGGCTAC TTCTGTTTTT
  TCCCCTCGGG CTGCTCGCCC CCACTGCCTG CAGGGTGCCT GGCGGGCTGA TCAAGTTTGA
  CCTTTTTTTT TTTTTTTTTT TTTTTCCCGT CAAAGTATAT CACCTCCACC TCCGCCGGCT
  AGGCGGCCTC TCTTCTGTCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss400266035	MGP_WTSI_18_35990480	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs234336283					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss400266035	MGP_WTSI_18_35990480	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:35963879 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9844	CpG island 9844	within coordinates
Cpgi9845	CpG island 9845	472 bp proximal
Cpgi9846	CpG island 9846	807 bp proximal
Cxxc5	CXXC finger 5	within coordinates
Gm29417	predicted gene 29417	within coordinates
Gm50371	predicted gene, 50371	within coordinates
Rr352723	regulatory region 352723	within coordinates
Rr370361	regulatory region 370361	1324 bp upstream
Tssr150567	transcription start site region 150567	1958 bp downstream
Tssr150568	transcription start site region 150568	1070 bp downstream
Tssr150569	transcription start site region 150569	1031 bp downstream
Tssr150570	transcription start site region 150570	1005 bp downstream
Tssr150571	transcription start site region 150571	987 bp downstream
Tssr150572	transcription start site region 150572	975 bp downstream
Tssr150573	transcription start site region 150573	715 bp downstream
Tssr150574	transcription start site region 150574	618 bp downstream
Tssr150575	transcription start site region 150575	463 bp downstream
Tssr150576	transcription start site region 150576	145 bp upstream
Tssr152918	transcription start site region 152918	689 bp upstream