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rs234343093 SNP Detail
Summary
  • ID
    rs234343093
  • Variation Type
    SNP
  • Alleles
    A/C
Genome Location and Flanking Sequence
  • Location
    Chr3:129005161 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                AACTCTTGCC ACTCCAGAAT
    TCAAATCTTG AGACAAGGAC GCCTGTAATC TAGAGAACCT TCTATCTTTG ATGCAAACGA
    GTCTACAGTA AAATGAGGCA TTGTGGGAGA TGGCACTGGG ATGCCCACAG TTATACTGAG
    GTTTAAAAGG AGAAACTAGA ATAGGATTAG TAAACACGTT GGGTAGAAAG ATCTGGATTC
    M
    TATTGACTTT AGTTATAGGT CATTGGCTGG CAAGTGCCAG GAGAAAATAT TTACTCTACA
    CATATACTTT ACGAACTTGA GGGAATTAAA GGAAATTCAA TAAGAAAATG GCTAGAAACA
    TTGAAAACCC TTATTTAAGA GACTTAAGCA AATTAGAGTC TTATCAGATT AAAAACCACT
    ACAAATGTAA GAACATTGTC                                            
    
    M = A/C
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss359681534 MGP_WTSI_3_128914430 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C A C C A C C C C A C C C C C C C C C C C C A C C C C A C C A C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs234343093 SNP C C C C C C C C C C C C C C C C C C C A C C A C C C C A C C C C C C C C C C C C A C C C C A C C A C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss359681534 MGP_WTSI_3_128914430 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:129005161 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Gm27195 predicted gene 27195 within coordinates
Pitx2 paired-like homeodomain transcription factor 2 Intron
Rr584968 regulatory region 584968 1504 bp distal
Rr584969 regulatory region 584969 1193 bp distal
Rr584970 regulatory region 584970 650 bp proximal
Rr584971 regulatory region 584971 1970 bp proximal
Tssr1043 transcription start site region 1043 1488 bp downstream
Tssr31630 transcription start site region 31630 1500 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory

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