rs234343121 SNP Detail

Summary

• ID
  rs234343121
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:27936015 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CACTTTCCT ACCCAGCCTC AGTTGTAGGT
  CCACCCATGC CCCCTACTCC AGCACTGCTC ATGCTCCTAG CTGGATTTCT GCCCTACAGA
  AACCCTCCTT CGTTGCGTTT CACATGGAAA CCACGCCTCC GAGTAGCCCC TCCCCTCTCG
  R
  CACTCAGAGC CCCGCCCCTA CGGCCCCGAG GCCCTACCTT CTCTCTCTCT CTAATCCCTC
  CTAACAAAGG TCAAGTCTCC TGCCAACCCC TCCCCGCCCT GGAGAACGGA GCCCCAGCCG
  ATTCTACCTT TCTCCTTGTT GAGCCAGCGG                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325349178	CHEV_17_27853986	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs234343121					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:27936015 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8855	CpG island 8855	within coordinates
Rr524285	regulatory region 524285	1145 bp proximal
Rr524286	regulatory region 524286	1781 bp proximal
Spdef	SAM pointed domain containing ets transcription factor	Intron