rs234344818 SNP Detail

Summary

• ID
  rs234344818
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:116026116 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    gcacacaca cacacacaca cacacacTTT
  CAAGGATATG ATCATGGTCC TCTGTTCTCA CCACAGAACA GGAAATGGTT GTTTTTCCTC
  TTCCTTTCAC AAAACCCACA AGACTTCAAG GTCACCGTCA TCAtcctctt cctcctcctc
  Y
  tcctcctcct tttcctcctc ttcctcctcc tcctccttct TTACATCCtt ttgcctgcat
  atctctgatg tgtgagcctg gttcttacgg agttcagagc agcccatcag atcccctgga
  gtcctggaac tgaaagttaa ggaggcagtg                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321277025	CHEV_4_115841524	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs234344818					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:116026116 () rs orientation: forward

Symbol	Name	Function Class
Rr84349	regulatory region 84349	916 bp distal
Rr84350	regulatory region 84350	516 bp distal
Rr84351	regulatory region 84351	within coordinates
Rr95993	regulatory region 95993	1265 bp proximal
Rr101863	regulatory region 101863	916 bp distal
Rr101864	regulatory region 101864	within coordinates
Tspan1	tetraspanin 1	1318 bp upstream
Tssr42870	transcription start site region 42870	1340 bp upstream
Tssr42871	transcription start site region 42871	1312 bp upstream