rs234355230 SNP Detail

Summary

• ID
  rs234355230
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:107147888 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGAATTCC TATGGCAACA
  CACCTCTGGA TACGTCTATG AGGGTATTTC CAGCAAAAAG AAATTGAGGC AGAAAGATCC
  ACCATGGCTG TGAGCATCAT CATACCATGA GCTACGGGCA CAAACTAGTG AAAAAGTGGC
  TGAGTGCCAG CAGTCAGTCA TCTCCCCACT CCAGGCTACA GATACAATGG TACCTGCCTC
  Y
  GCTATTCCTG CAGCCTTGAT CTCCCTGTCA TGATGGGCTG GACACTCAGT CTGTGAATGA
  GAATTAAGCC TTTGCTAACA ATGACAAGGT ACCTAATACA AGCAGTAAAT GCCCCTGGAC
  CATTTACCAG GAGGAGGAAC TGAAGATAAG AACGCACTCA GGCTCCACCC TGGCAGCTCC
  TGCAGAGAAG TGGACTCGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320864892	CHEV_3_107043490	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs234355230					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:107147888 () rs orientation: forward

Symbol	Name	Function Class
Gm66085	predicted gene, 66085	1294 bp upstream
Prok1	prokineticin 1	865 bp upstream
Rr582947	regulatory region 582947	952 bp proximal
Rr582948	regulatory region 582948	1305 bp proximal
Tssr31192	transcription start site region 31192	1217 bp upstream
Tssr31193	transcription start site region 31193	1288 bp upstream
Tssr31194	transcription start site region 31194	1343 bp upstream
Tssr35054	transcription start site region 35054	1865 bp upstream